PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009608279.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 605aa    MW: 67292 Da    PI: 6.8382
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009608279.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.32.4e-12434480455
                     HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI ++q
  XP_009608279.1 434 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYITEMQ 480
                     799***********************66......***************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142157.2E-5548236IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.475430479IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.87E-13433484No hitNo description
SuperFamilySSF474591.83E-17433492IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.9E-10434480IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-17434491IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.5E-16436485IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 605 aa     Download sequence    Send to blast
MGTVNMSWSD EDKATVAAVL GKEAFEYLIS SSVSAECSLM AIGNDQNLQN KLSDLVERPN  60
ATNFSWNYAI FWQISRSKSG ELVLGWGDGC CREPREGEER EVKSIFNLRL EDEAPQRMRK  120
RVLQKLHMLF GGTDEDNYAI GLDRVTDTEI FFLASMYFSF PRGEGGPGKC FGSGKHLWLS  180
DALKSPLDYC ARSFLAKSAG MQTIVLIPTD VGVVELGSVR SIPESLELLH SIKSCFSSFL  240
VRAKQAAGLA VVTEKKDGNN SPFSSSAFSE RPDGIPKIFG HDLNSGTHFR EKLAVRKAEE  300
RPWDIYQNGT RMPFMNGRTG LHAASWAQFS NVKPVKPVEL YSPQTPPAHN LQELVNGGRE  360
EFRLNNFQHQ KPARMQIDFT GATSRPIISP AHTVESEHSD VEASCKEDCA GPVDEKRPRK  420
RGRKPANGRE EPLNHVEAER QRREKLNQRF YALRAVVPNI SKMDKASLLG DAIAYITEMQ  480
KKLRDMESER ELRLGSTSRD AMAAEDSPNS EIQIRGPDIN VEAANDEVIV RVSCPLETHP  540
ISRVIQTFKD AQINVVESKL SAGNGTVFHT FVLKSSGSEQ LTKEKLLAAF SSESDSLRQF  600
SPVGQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A8e-29428490264Transcription factor MYC2
5gnj_B8e-29428490264Transcription factor MYC2
5gnj_E8e-29428490264Transcription factor MYC2
5gnj_F8e-29428490264Transcription factor MYC2
5gnj_G8e-29428490264Transcription factor MYC2
5gnj_I8e-29428490264Transcription factor MYC2
5gnj_M8e-29428490264Transcription factor MYC2
5gnj_N8e-29428490264Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1415423KRPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009608279.10.0PREDICTED: transcription factor bHLH13-like
RefseqXP_016440077.10.0PREDICTED: transcription factor bHLH13-like
SwissprotA0A3Q7ELQ20.0MTB1_SOLLC; Transcription factor MTB1
TrEMBLA0A1S3XK830.0A0A1S3XK83_TOBAC; transcription factor bHLH13-like
STRINGXP_009608279.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA35852348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.30.0bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]