PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009608011.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 333aa    MW: 36226.9 Da    PI: 6.8681
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009608011.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH130.000192272651255
                     HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     R +++ +++  L +l+ +      +K + a++L +A+ YI+ Lq
  XP_009608011.1 227 RKEKLGDRITSLHQLVSPF-----GKTDTASVLSEAIGYIRFLQ 265
                     6678889999999999998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.45E-6210269No hitNo description
PROSITE profilePS5088811.141215264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-10225275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-7229272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MMAGNPTNWW SMLMNGNNMH QQSEHISSSS SSSHFYGASN SSLDDNSTQD FSARSLSQLL  60
LSGFSGDEEK FGISPFHQAG NSEDQNLNSV HIPSASNFRV NPIDDVKPEL GQLYDYHHHV  120
QNEFQASLQE KLELPTEFTK HAAYTCRSLL ANSWSQHQDM PSPASSCITT GLLNHNVLNF  180
SSNKNSKGEL KHQHPDNSSE CNSTSSGGIS KKARVQHSSG QPSLKVRKEK LGDRITSLHQ  240
LVSPFGKTDT ASVLSEAIGY IRFLQGQIQA LSSPYLGNAS GSMGHVPQQS DSQHKTKDLR  300
SRGLCLVPIS CMQNVGSDTG ADYWAPALGG SGF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754451e-33HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009608011.10.0PREDICTED: transcription factor bHLH68-like isoform X1
TrEMBLA0A1S4A5760.0A0A1S4A576_TOBAC; transcription factor bHLH68-like isoform X1
STRINGXP_009608011.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15192247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.13e-56bHLH family protein