PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

GRAS

Protein Properties

Length: 745aa MW: 84310.5 Da PI: 6.4677

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009607974.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	388.4	8e-119	372	742	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 l++lL+ cA+av++++ + a++lL+++++ +sp gd mqRla+yf+++L+ar+a+s++++ykal +++ s +++l+ ++l+ ++P+ k+s+ XP_009607974.1 372 LRTLLTLCAQAVAAENRRTANELLKEIRQGSSPMGDGMQRLAHYFANGLEARMAGSGTHIYKALITRPVS---AADVLKGYQLLLAACPFRKISN 463 5789*************************************************************999...99**************** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188 + N+aI++ +e++++vHiiD++i+ G+QWpaL+q L+sRp+gpp+lRiTg++ p++g + ++eetg+rL+++Ae+++vpfefn+ +a+++e+ XP_009607974.1 464 FFSNKAIMNLAENDSTVHIIDIGIMWGFQWPALIQRLSSRPGGPPKLRITGIDFPHPGfrPAVRVEETGRRLTNYAERFNVPFEFNA-IAQKWET 557 ****************************************************9999***********************.7** PP GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283 ++le+L++++gE+l+Vn+ ++ +llde+v+++s+rd vL+l+++l+P+v+++ + +n++ F +rf eal +ys+lfd+lea++pre +er+ XP_009607974.1 558 IKLEDLKINKGEVLVVNCLYRFRNLLDETVDVNSPRDVVLNLIRKLNPDVFILGIVNGAYNAPFFITRFREALFHYSSLFDMLEANIPREVHERM 652 ******************************************************************************************* PP GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +E+ +lgre++nv+ace+aer+er et+++W+ r+++aGF+++pl+e+++ a + ++++ + ++ +s++l+ gWk+r +++S W+ XP_009607974.1 653 LIEKNILGREAMNVIACETAERIERPETYKQWQVRIMKAGFRQLPLDEEIMRMATERFKVYDKN-FVIDVDSEWLLHGWKGRIGYALSTWK 742 ******************************************************999966.***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	68.426	346	723	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.8E-116	372	742	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 745 aa Download sequence Send to blast
MGLYEAGCAI KLEDEAHSFF PDPNLINNLR VNDNLVNRNH VDISPFQSNT LVPSTADEDY 60 DFSDVVLKYI NQMLMEEDIE EMSCMFQESA ALRAAEQSFY EVIGEEYPSP PIVEKPSNLG 120 QNGHYTRETS HFYYSGNDGC DGIPCPNWNL DLGGDDVPYV SHFPDGVALR STSWSPHSSS 180 STVTDVPVDS PVSTLRIPDI FSDRESIMQF KKGVEEASKF IPRGNSLFAD VRYNAVGNEQ 240 NEERKDAVVK VAKYGEKQSP ERSRGKKNTL QEDVVDSMEE RNNKQSAVFY ESTVRSEMFD 300 RVLLCNAGKD ESALRETWQT ISRRNALENG VSKGSNGKKS QGKKQGGKRN VVDLSKNSQA 360 KKQGGKRDVV DLRTLLTLCA QAVAAENRRT ANELLKEIRQ GSSPMGDGMQ RLAHYFANGL 420 EARMAGSGTH IYKALITRPV SAADVLKGYQ LLLAACPFRK ISNFFSNKAI MNLAENDSTV 480 HIIDIGIMWG FQWPALIQRL SSRPGGPPKL RITGIDFPHP GFRPAVRVEE TGRRLTNYAE 540 RFNVPFEFNA IAQKWETIKL EDLKINKGEV LVVNCLYRFR NLLDETVDVN SPRDVVLNLI 600 RKLNPDVFIL GIVNGAYNAP FFITRFREAL FHYSSLFDML EANIPREVHE RMLIEKNILG 660 REAMNVIACE TAERIERPET YKQWQVRIMK AGFRQLPLDE EIMRMATERF KVYDKNFVID 720 VDSEWLLHGW KGRIGYALST WKAAC

Sequence ? help Back to Top

Protein Sequence Length: 745 aa Download sequence Send to blast

MGLYEAGCAI KLEDEAHSFF PDPNLINNLR VNDNLVNRNH VDISPFQSNT LVPSTADEDY  60
DFSDVVLKYI NQMLMEEDIE EMSCMFQESA ALRAAEQSFY EVIGEEYPSP PIVEKPSNLG  120
QNGHYTRETS HFYYSGNDGC DGIPCPNWNL DLGGDDVPYV SHFPDGVALR STSWSPHSSS  180
STVTDVPVDS PVSTLRIPDI FSDRESIMQF KKGVEEASKF IPRGNSLFAD VRYNAVGNEQ  240
NEERKDAVVK VAKYGEKQSP ERSRGKKNTL QEDVVDSMEE RNNKQSAVFY ESTVRSEMFD  300
RVLLCNAGKD ESALRETWQT ISRRNALENG VSKGSNGKKS QGKKQGGKRN VVDLSKNSQA  360
KKQGGKRDVV DLRTLLTLCA QAVAAENRRT ANELLKEIRQ GSSPMGDGMQ RLAHYFANGL  420
EARMAGSGTH IYKALITRPV SAADVLKGYQ LLLAACPFRK ISNFFSNKAI MNLAENDSTV  480
HIIDIGIMWG FQWPALIQRL SSRPGGPPKL RITGIDFPHP GFRPAVRVEE TGRRLTNYAE  540
RFNVPFEFNA IAQKWETIKL EDLKINKGEV LVVNCLYRFR NLLDETVDVN SPRDVVLNLI  600
RKLNPDVFIL GIVNGAYNAP FFITRFREAL FHYSSLFDML EANIPREVHE RMLIEKNILG  660
REAMNVIACE TAERIERPET YKQWQVRIMK AGFRQLPLDE EIMRMATERF KVYDKNFVID  720
VDSEWLLHGW KGRIGYALST WKAAC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	1e-56	379	741	26	378	Protein SCARECROW
5b3h_A	1e-56	379	741	25	377	Protein SCARECROW
5b3h_D	1e-56	379	741	25	377	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009607974.1	0.0	PREDICTED: scarecrow-like protein 14
Refseq	XP_009607976.1	0.0	PREDICTED: scarecrow-like protein 14
Refseq	XP_009607977.1	0.0	PREDICTED: scarecrow-like protein 14
Refseq	XP_018628267.1	0.0	PREDICTED: scarecrow-like protein 14
Swissprot	Q9XE58	0.0	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A1S4AZ92	0.0	A0A1S4AZ92_TOBAC; scarecrow-like protein 14
STRING	XP_009607974.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA276	24	191

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	0.0	SCARECROW-like 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]