PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009607890.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 377aa    MW: 41751.5 Da    PI: 6.0467
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009607890.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.67e-16139185455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      hn  E+rRR+riN+++  L+ l+P++      K +Ka++L +A+eY+k+Lq
  XP_009607890.1 139 VHNLSEKRRRSRINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 185
                     6*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.96E-20132195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-20132195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.86135184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.97E-17138189No hitNo description
PfamPF000102.4E-13139185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.3E-18141190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009409Biological Processresponse to cold
GO:0010114Biological Processresponse to red light
GO:0010154Biological Processfruit development
GO:0010187Biological Processnegative regulation of seed germination
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MANNNIYHHN ARTSFSLTEP DAEPDDISVF LRHILNHSSN FMTHETQYSS SLPHLLPKNQ  60
HGELSSVLNS SAGGIFSSSY GAYNVPANVS SSSVGTMDND PDEYECESEG GTEDLGVEGS  120
AQQPPPRNTN SKRSRAAEVH NLSEKRRRSR INEKMKALQN LIPNSNKTDK ASMLDEAIEY  180
LKQLQLQVQM LTMRNGLSMY PMGLPRVLQQ NQVSQLSMDL CEGNGYTNAK AAGALHVNQD  240
TSLNAIFSPS ENRTETKLTP VATMSNVNHS NNAFESESSI NVHLDPFQLS RSTCKGILRE  300
DWLPLHEMSE RQSKTVSIGE NVAPTVPFDA SGLKRNTLEA CFLRYQFGAM GETNMDCDQL  360
LAPQLYRLQK SGSHLIL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00035PBMTransfer from AT4G36930Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ0042353e-62FJ004235.1 Catharanthus roseus bHLH transcription factor MYC5 (MYC5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009607890.10.0PREDICTED: transcription factor SPATULA
RefseqXP_016487135.10.0PREDICTED: transcription factor SPATULA-like
TrEMBLA0A1S4BDY00.0A0A1S4BDY0_TOBAC; transcription factor SPATULA-like
STRINGXP_009607890.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA98502227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.18e-43bHLH family protein