PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009607840.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 401aa    MW: 44506.8 Da    PI: 5.6025
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009607840.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.82.6e-29172233159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDg++WrKYGqK++ g+++pr+YYrCt +   gC ++k+v+rs+edp+++eitY+g+H+++
  XP_009607840.1 172 LDDGFSWRKYGQKDILGAKYPRGYYRCTLRhaqGCLATKQVQRSDEDPTILEITYRGRHTCN 233
                     59**************************988889**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.837167230IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.4E-28169233IPR003657WRKY domain
SuperFamilySSF1182901.83E-25171234IPR003657WRKY domain
SMARTSM007741.5E-41172234IPR003657WRKY domain
PfamPF031062.5E-26173232IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009751Biological Processresponse to salicylic acid
GO:0010193Biological Processresponse to ozone
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MVSPIKFNYH IPTLSLLQLF VLYSTYTLIS EMENYGADNN GEFNRIISEL TQGRDLVYQL  60
QLQLNSSSSS PETARDFLLH NIQSKFDKAL SLLQLSTGDS SNSLLPHSNS VPIPNFGRSE  120
SPPSFTASPP HSEDSDRDLE PKDSATRKRK SSTPRWTKQV QICPGAPIEG TLDDGFSWRK  180
YGQKDILGAK YPRGYYRCTL RHAQGCLATK QVQRSDEDPT ILEITYRGRH TCNQGGASAN  240
NNNNNNNNVM NSAPLTIIPQ NQEPNLGVGS GNEHHQMVSV PNQNPQEILL NFQRNLNISN  300
DNNFNFNYDP NNVPFTSFAS SSDIKADQDY SFVPNSIIPS NNFVENFSPS YMSAGTSGSS  360
SSYFGLSSNS EMNTFGGKQN GSNDYPFNTS NFPFDYPGFS S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-19172232868OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145150TRKRKS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00525DAPTransfer from AT5G24110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4600844e-95DQ460084.1 Nicotiana tabacum cDNA-AFLP fragment HN_BC2M14-487 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009607840.10.0PREDICTED: probable WRKY transcription factor 30 isoform X1
TrEMBLA0A1S4DHQ60.0A0A1S4DHQ6_TOBAC; probable WRKY transcription factor 30
STRINGXP_009607840.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA117431922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.13e-45WRKY family protein