 |
Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
XP_009607768.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
| Family |
SRS |
| Protein Properties |
Length: 199aa MW: 22859.6 Da PI: 8.2084 |
| Description |
SRS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_009607768.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF702 | 178.5 | 3.1e-55 | 11 | 147 | 4 | 154 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskk 98
+++CqdCGnqakkdC + RCRtCCks+gf+C+thvkstW+p+++rr r++ l++ +++++++ ++l+ + + ++ +l+
XP_009607768.1 11 SNSRCQDCGNQAKKDCPYLRCRTCCKSQGFQCQTHVKSTWIPVSRRRPRHHLLHTIQQQQQQQ---------KQLQVNPKRYRENDNLAA----- 91
6789*********************************************99998876555433.........222223333333333333..... PP
DUF702 99 eletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
e ++ P+evs +avfrcvrvss d+ +++aYqt+v+i+GhvfkGiLydqG+e+
XP_009607768.1 92 GGEEEDVPTEVSLPAVFRCVRVSSTDNVVDQYAYQTSVNIAGHVFKGILYDQGPET 147
3456789***********************************************96 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 199 aa
Download sequence Send
to blast |
MMMMREEGIS SNSRCQDCGN QAKKDCPYLR CRTCCKSQGF QCQTHVKSTW IPVSRRRPRH 60
HLLHTIQQQQ QQQKQLQVNP KRYRENDNLA AGGEEEDVPT EVSLPAVFRC VRVSSTDNVV 120
DQYAYQTSVN IAGHVFKGIL YDQGPETETH YNNMARESSS NGFQQEQLTT NLTPPPPFYP 180
SPFNNFMPGT QFFQYPKSS
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT5G66350.1 | 1e-47 | Lateral root primordium (LRP) protein-related |
