PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009607454.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARR-B
Protein Properties Length: 429aa    MW: 49118.4 Da    PI: 8.7252
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009607454.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like751e-23193247155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k+r+ Wtp+LH +F++a++ LG ++kA Pk++l+lm+v+ Lt  hv+SHLQk+Rl
  XP_009607454.1 193 KQRVIWTPQLHLKFLKAINALGDEKKAQPKALLKLMNVPNLTHRHVASHLQKHRL 247
                     79****************************************************8 PP
2Response_reg65.91.8e-22211291109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     +l+vd + + ++  +++le++ y +v++ + ++ al +++e++  +Dl++  ++mp+mdG+++l +i  e  ++pii+++ ++++e+a++al+ G
  XP_009607454.1  21 ILVVDHDTSSLMHTASILEEQSY-KVTTIELATIALSMIREREnqYDLVIAEVNMPQMDGFTFLNHILLER-DIPIILMSHRSKMEMAKKALEEG 113
                     89*********************.***************766666**********************6655.7********************** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a  f  Kp+ +++l++
  XP_009607454.1 114 ACFFWQKPIRIKDLIN 129
                     *************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23001.0E-3117154No hitNo description
SuperFamilySSF521729.25E-2717138IPR011006CheY-like superfamily
SMARTSM004489.1E-1819131IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011034.98920135IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.2E-1921129IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.01E-1922135No hitNo description
Gene3DG3DSA:1.10.10.607.2E-23191251IPR009057Homeodomain-like
SuperFamilySSF466891.79E-15192249IPR009057Homeodomain-like
TIGRFAMsTIGR015574.7E-20193248IPR006447Myb domain, plants
PfamPF002491.7E-5198246IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MDVKSLKNII AIPSSAKGLR ILVVDHDTSS LMHTASILEE QSYKVTTIEL ATIALSMIRE  60
RENQYDLVIA EVNMPQMDGF TFLNHILLER DIPIILMSHR SKMEMAKKAL EEGACFFWQK  120
PIRIKDLINV WQHIFHNKVK AKLQKEKYRR PEESSCERSA ARKVEFINPL NNSTVNNYME  180
KKSSQVRINL EQKQRVIWTP QLHLKFLKAI NALGDEKKAQ PKALLKLMNV PNLTHRHVAS  240
HLQKHRLRVM RSSGNSETSR LKPYYGSNEL QKKMDFSKSF FEFSNSSNAN PTASKVQLNI  300
ESSGYFGIDK IKELLTDVKS CSSNLGINEK IDDKETFAIE SNSRISSCGI GVINFQEGNY  360
FQGLEKQDLG LNISRGQFEN ENNLEEYFGD VQNLEVNSGI RGKYELSCSS PLEKISMCET  420
EIMKMLEEV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009607454.10.0PREDICTED: two-component response regulator ARR14
TrEMBLA0A1S3X9350.0A0A1S3X935_TOBAC; two-component response regulator ARR14-like
STRINGXP_009607454.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1550856
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.13e-49response regulator 11