PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009607290.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 302aa    MW: 32256.4 Da    PI: 5.9703
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009607290.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.41.4e-09151195554
                     HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                     h+++Er RR+ri +++  L+el+P+ +      K + a +L + v+Y+k L
  XP_009607290.1 151 HSIAERLRRERIAERIRALQELVPSvN------KTDRAVMLDEIVDYVKFL 195
                     99***********************55......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.06E-15144205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.044146195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-14148205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.4E-7151195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-10152201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0031347Biological Processregulation of defense response
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MANNPSEGPD DFFDQILGFP TYNGAEQNLA GNDAGAIPPA MMLQLNSGDG SGQFSGMGLG  60
VGLGGGGGFH HPSQSGSFPL GLSLEGGKSG FMKMDDASAV PGRRFRDDIV DSRASSSVKP  120
GFHGQPMPSM PHPPAIRPRV RARRGQATDP HSIAERLRRE RIAERIRALQ ELVPSVNKTD  180
RAVMLDEIVD YVKFLRLQVK VLSMSRLGGA GAVAPLVTDI PISSVEEESS EVGNNQPAWE  240
KWSSDGTERQ VAKLMEENVG SAMQFLQSKA LCIMPISLAS AIYHSQPPDT SSLVKPETNP  300
PP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155160RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0174801e-127AB017480.2 Nicotiana tabacum mRNA for chloroplast FtsH protease, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009607290.10.0PREDICTED: transcription factor UNE12
RefseqXP_016507239.10.0PREDICTED: transcription factor UNE12-like
SwissprotO227681e-115UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A1S4D1U50.0A0A1S4D1U5_TOBAC; transcription factor UNE12-like
STRINGXP_009607290.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57992434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.27e-93bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]