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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009606924.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NAC | ||||||||
Protein Properties | Length: 144aa MW: 16056.8 Da PI: 8.0459 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 69.7 | 7.8e-22 | 5 | 125 | 1 | 118 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpkkvkaeek....ewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrFhPtdeel+++yLkkkv+++ ++ ++i+++d+yk++Pw+L ++++++ e Fs+ ++++ + ++ + g+dk XP_009606924.1 5 LPPGFRFHPTDEELIDCYLKKKVSASYpDPVISIIADIDLYKFNPWELLYTISGNRPilerE-NGFSTVPSAEN--ILMVFVLTDQLHQGLGTDK 96 79*********************99885566677**************85544422222212.33333333322..222233456778999**** PP NAM 91 evlsk.kgelvglkktLvfykgrapkgek 118 ++ls+ +++ g+k+tLvfy grapkg+k XP_009606924.1 97 PILSSiTSQCLGVKNTLVFYIGRAPKGTK 125 ****988899****************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.32E-22 | 4 | 126 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 21.595 | 5 | 144 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.4E-11 | 6 | 122 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 144 aa Download sequence Send to blast |
MDRSLPPGFR FHPTDEELID CYLKKKVSAS YPDPVISIIA DIDLYKFNPW ELLYTISGNR 60 PILERENGFS TVPSAENILM VFVLTDQLHQ GLGTDKPILS SITSQCLGVK NTLVFYIGRA 120 PKGTKLRLTG RCTSIGLLIM AILL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 8e-20 | 4 | 125 | 16 | 132 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 8e-20 | 4 | 125 | 16 | 132 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 8e-20 | 4 | 125 | 16 | 132 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 8e-20 | 4 | 125 | 16 | 132 | NO APICAL MERISTEM PROTEIN |
3swm_A | 9e-20 | 4 | 125 | 19 | 135 | NAC domain-containing protein 19 |
3swm_B | 9e-20 | 4 | 125 | 19 | 135 | NAC domain-containing protein 19 |
3swm_C | 9e-20 | 4 | 125 | 19 | 135 | NAC domain-containing protein 19 |
3swm_D | 9e-20 | 4 | 125 | 19 | 135 | NAC domain-containing protein 19 |
3swp_A | 9e-20 | 4 | 125 | 19 | 135 | NAC domain-containing protein 19 |
3swp_B | 9e-20 | 4 | 125 | 19 | 135 | NAC domain-containing protein 19 |
3swp_C | 9e-20 | 4 | 125 | 19 | 135 | NAC domain-containing protein 19 |
3swp_D | 9e-20 | 4 | 125 | 19 | 135 | NAC domain-containing protein 19 |
4dul_A | 8e-20 | 4 | 125 | 16 | 132 | NAC domain-containing protein 19 |
4dul_B | 8e-20 | 4 | 125 | 16 | 132 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor of the NAC family associated with male fertility. {ECO:0000250}. | |||||
UniProt | Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. Sequences of 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype. {ECO:0000269|PubMed:17124321, ECO:0000269|PubMed:20005003}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016491527.1 | 1e-102 | PREDICTED: NAC transcription factor 56-like | ||||
Swissprot | A0SPJ8 | 1e-22 | NAM1_HORVV; NAC transcription factor NAM-1 | ||||
Swissprot | A2YMR0 | 2e-22 | NAC10_ORYSI; NAC transcription factor ONAC010 | ||||
TrEMBL | A0A1S4BRL8 | 1e-101 | A0A1S4BRL8_TOBAC; NAC transcription factor 56-like | ||||
STRING | XP_009606924.1 | 1e-102 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA24401 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61110.1 | 2e-24 | NAC domain containing protein 25 |
Publications ? help Back to Top | |||
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