PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009606924.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NAC

Protein Properties

Length: 144aa MW: 16056.8 Da PI: 8.0459

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009606924.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	69.7	7.8e-22	5	125	1	118
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpkkvkaeek....ewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrFhPtdeel+++yLkkkv+++ ++ ++i+++d+yk++Pw+L ++++++ e Fs+ ++++ + ++ + g+dk XP_009606924.1 5 LPPGFRFHPTDEELIDCYLKKKVSASYpDPVISIIADIDLYKFNPWELLYTISGNRPilerE-NGFSTVPSAEN--ILMVFVLTDQLHQGLGTDK 96 79*******************99885566677**********85544422222212.33333333322..222233456778999 PP NAM 91 evlsk.kgelvglkktLvfykgrapkgek 118 ++ls+ +++ g+k+tLvfy grapkg+k XP_009606924.1 97 PILSSiTSQCLGVKNTLVFYIGRAPKGTK 125 988899**************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.32E-22	4	126	IPR003441	NAC domain
PROSITE profile	PS51005	21.595	5	144	IPR003441	NAC domain
Pfam	PF02365	2.4E-11	6	122	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 144 aa Download sequence Send to blast
MDRSLPPGFR FHPTDEELID CYLKKKVSAS YPDPVISIIA DIDLYKFNPW ELLYTISGNR 60 PILERENGFS TVPSAENILM VFVLTDQLHQ GLGTDKPILS SITSQCLGVK NTLVFYIGRA 120 PKGTKLRLTG RCTSIGLLIM AILL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	8e-20	4	125	16	132	NO APICAL MERISTEM PROTEIN
1ut4_B	8e-20	4	125	16	132	NO APICAL MERISTEM PROTEIN
1ut7_A	8e-20	4	125	16	132	NO APICAL MERISTEM PROTEIN
1ut7_B	8e-20	4	125	16	132	NO APICAL MERISTEM PROTEIN
3swm_A	9e-20	4	125	19	135	NAC domain-containing protein 19
3swm_B	9e-20	4	125	19	135	NAC domain-containing protein 19
3swm_C	9e-20	4	125	19	135	NAC domain-containing protein 19
3swm_D	9e-20	4	125	19	135	NAC domain-containing protein 19
3swp_A	9e-20	4	125	19	135	NAC domain-containing protein 19
3swp_B	9e-20	4	125	19	135	NAC domain-containing protein 19
3swp_C	9e-20	4	125	19	135	NAC domain-containing protein 19
3swp_D	9e-20	4	125	19	135	NAC domain-containing protein 19
4dul_A	8e-20	4	125	16	132	NAC domain-containing protein 19
4dul_B	8e-20	4	125	16	132	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family associated with male fertility. {ECO:0000250}.
UniProt	Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. Sequences of 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype. {ECO:0000269\|PubMed:17124321, ECO:0000269\|PubMed:20005003}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016491527.1	1e-102	PREDICTED: NAC transcription factor 56-like
Swissprot	A0SPJ8	1e-22	NAM1_HORVV; NAC transcription factor NAM-1
Swissprot	A2YMR0	2e-22	NAC10_ORYSI; NAC transcription factor ONAC010
TrEMBL	A0A1S4BRL8	1e-101	A0A1S4BRL8_TOBAC; NAC transcription factor 56-like
STRING	XP_009606924.1	1e-102	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA24401	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61110.1	2e-24	NAC domain containing protein 25

Publications ? help Back to Top
Uauy C,Distelfeld A,Fahima T,Blechl A,Dubcovsky J A NAC Gene regulating senescence improves grain protein, zinc, and iron content in wheat. Science, 2006. 314(5803): p. 1298-301 [PMID:17124321] Jamar C, et al. NAM-1gene polymorphism and grain protein content in Hordeum. J. Plant Physiol., 2010. 167(6): p. 497-501 [PMID:20005003]