PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009606924.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 144aa    MW: 16056.8 Da    PI: 8.0459
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009606924.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM69.77.8e-2251251118
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpkkvkaeek....ewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                     lppGfrFhPtdeel+++yLkkkv+++   ++ ++i+++d+yk++Pw+L  ++++++     e   Fs+  ++++       + ++   +  g+dk
  XP_009606924.1   5 LPPGFRFHPTDEELIDCYLKKKVSASYpDPVISIIADIDLYKFNPWELLYTISGNRPilerE-NGFSTVPSAEN--ILMVFVLTDQLHQGLGTDK 96 
                     79*********************99885566677**************85544422222212.33333333322..222233456778999**** PP

             NAM  91 evlsk.kgelvglkktLvfykgrapkgek 118
                     ++ls+ +++  g+k+tLvfy grapkg+k
  XP_009606924.1  97 PILSSiTSQCLGVKNTLVFYIGRAPKGTK 125
                     ****988899****************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.32E-224126IPR003441NAC domain
PROSITE profilePS5100521.5955144IPR003441NAC domain
PfamPF023652.4E-116122IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MDRSLPPGFR FHPTDEELID CYLKKKVSAS YPDPVISIIA DIDLYKFNPW ELLYTISGNR  60
PILERENGFS TVPSAENILM VFVLTDQLHQ GLGTDKPILS SITSQCLGVK NTLVFYIGRA  120
PKGTKLRLTG RCTSIGLLIM AILL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-20412516132NO APICAL MERISTEM PROTEIN
1ut4_B8e-20412516132NO APICAL MERISTEM PROTEIN
1ut7_A8e-20412516132NO APICAL MERISTEM PROTEIN
1ut7_B8e-20412516132NO APICAL MERISTEM PROTEIN
3swm_A9e-20412519135NAC domain-containing protein 19
3swm_B9e-20412519135NAC domain-containing protein 19
3swm_C9e-20412519135NAC domain-containing protein 19
3swm_D9e-20412519135NAC domain-containing protein 19
3swp_A9e-20412519135NAC domain-containing protein 19
3swp_B9e-20412519135NAC domain-containing protein 19
3swp_C9e-20412519135NAC domain-containing protein 19
3swp_D9e-20412519135NAC domain-containing protein 19
4dul_A8e-20412516132NAC domain-containing protein 19
4dul_B8e-20412516132NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family associated with male fertility. {ECO:0000250}.
UniProtTranscription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. Sequences of 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype. {ECO:0000269|PubMed:17124321, ECO:0000269|PubMed:20005003}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016491527.11e-102PREDICTED: NAC transcription factor 56-like
SwissprotA0SPJ81e-22NAM1_HORVV; NAC transcription factor NAM-1
SwissprotA2YMR02e-22NAC10_ORYSI; NAC transcription factor ONAC010
TrEMBLA0A1S4BRL81e-101A0A1S4BRL8_TOBAC; NAC transcription factor 56-like
STRINGXP_009606924.11e-102(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2440122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.12e-24NAC domain containing protein 25
Publications ? help Back to Top
  1. Uauy C,Distelfeld A,Fahima T,Blechl A,Dubcovsky J
    A NAC Gene regulating senescence improves grain protein, zinc, and iron content in wheat.
    Science, 2006. 314(5803): p. 1298-301
    [PMID:17124321]
  2. Jamar C, et al.
    NAM-1gene polymorphism and grain protein content in Hordeum.
    J. Plant Physiol., 2010. 167(6): p. 497-501
    [PMID:20005003]