PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009606886.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GATA
Protein Properties Length: 263aa    MW: 29873.6 Da    PI: 7.7302
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009606886.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.91.6e-19195229135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++Cg+ kTp+WR gp g+ktLCnaCG++y++ +l
  XP_009606886.1 195 CQHCGVDKTPQWRAGPMGPKTLCNACGVRYKSGRL 229
                     *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.9E-18189243IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.057189225IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.09E-15191252No hitNo description
Gene3DG3DSA:3.30.50.105.9E-15192227IPR013088Zinc finger, NHR/GATA-type
CDDcd002027.99E-16194242No hitNo description
PfamPF003202.3E-17195229IPR000679Zinc finger, GATA-type
PROSITE patternPS003440195220IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MNMIEDLDST ACFMVDDDIL NFSLDEEKHP SISSSSFSSL DSSNNISFLP DDHSRSFHCI  60
LQESVEEELE WLSNKDAFPA VEFDIFSENI PNVIFDHHSP VSVLENSSSS SANNNSCNLN  120
DKENAFMIGC SSLQVPVNYP VRARGKRRRR ISFADLTNER CVWGRKLKFK NNKQEWELLS  180
LPMTKARRAS IGRRCQHCGV DKTPQWRAGP MGPKTLCNAC GVRYKSGRLL PEYRPANSPT  240
FSADLHSNSH RKVLEMRKQR IGI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145150KRRRRI
2146167RRRRISFADLTNERCVWGRKLK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754442e-83HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009606886.10.0PREDICTED: GATA transcription factor 1-like isoform X1
TrEMBLA0A314KZW51e-159A0A314KZW5_NICAT; Gata transcription factor 1
STRINGXP_009606886.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40762445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.19e-46GATA transcription factor 1