PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB

Protein Properties

Length: 338aa MW: 38591.5 Da PI: 7.3587

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009606781.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.7	1.3e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l ++++++G g+W++ ++ g++R++k+c++rw +yl XP_009606781.1 14 KGPWTPEEDQKLTNYINKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	55.4	1.4e-17	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE++ ++++++ lG++ W++Ia +++ gRt++++k++w+++l XP_009606781.1 67 RGKFSQEEEQTILNLHAVLGNK-WSAIATHLP-GRTDNEIKNFWNTHL 112 89******************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.0E-26	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	17.399	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	8.07E-32	11	108	IPR009057	Homeodomain-like
SMART	SM00717	1.7E-15	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	2.5E-17	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	6.26E-12	16	61	No hit	No description
PROSITE profile	PS51294	27.07	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	5.3E-28	65	117	IPR009057	Homeodomain-like
SMART	SM00717	1.5E-16	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	2.3E-16	67	112	IPR001005	SANT/Myb domain
CDD	cd00167	5.34E-12	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
MGRSPCCEEN GLKKGPWTPE EDQKLTNYIN KHGHGSWRAL PKLAGLNRCG KSCRLRWTNY 60 LRPDIKRGKF SQEEEQTILN LHAVLGNKWS AIATHLPGRT DNEIKNFWNT HLKKKLIQMG 120 YDPMTHRPRT DIFNSLQHLI ALANLKELME HQYLQNLLQT HNNISFNTSI QDIEAYNLLN 180 SLSSLKDSQF LGTNNHMENH LISSPNSSLQ AQDLIPFSHL PELQTSCSFQ NLINKDKVRP 240 QNTDFTVLSN GETLSPTSPW IPSALSPSPP RPSLTNDQRR KENSSEMVVS SCLPEERKLP 300 DYLFQPDSER ALSNEGAPPS IWPDLLLEDS FFQDIPKF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	4e-29	12	116	5	108	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250\|UniProtKB:Q9M2D9}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by gravity in roots. {ECO:0000269\|PubMed:24902892}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975443	5e-42	HG975443.1 Solanum pennellii chromosome ch04, complete genome.
GenBank	HG975516	5e-42	HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009606781.1	0.0	PREDICTED: myb-related protein 330-like
Swissprot	Q9SBF3	5e-98	MYB92_ARATH; Transcription factor MYB92
TrEMBL	A0A1S4BYM2	0.0	A0A1S4BYM2_TOBAC; myb-related protein 330-like
STRING	XP_009606781.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34670.1	2e-96	myb domain protein 93

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]