PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009606580.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 301aa    MW: 33847.3 Da    PI: 4.8222
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009606580.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.11e-10126171555
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     h + Er+RR+++ + f  L  +lP +     kK++Ka+ L  +++Y+k+Lq
  XP_009606580.1 126 HAILERKRRQKLTQLFISLSNILPGL-----KKMDKASLLGDTIQYMKELQ 171
                     999***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.973121170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.29E-15126183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.09E-9126175No hitNo description
PfamPF000101.5E-8126171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-14126183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-11127176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.818227301IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MAKDGMDYDG LSHQGSMESI DDFLLEDDFF NRNLIILSEM YSTLTPYFNS TSLSSCIIEE  60
NVQKALISPP SSSSSSSCSE VLISFSMPTK RDVEKSYFDP LTHHFEESTG NNNNIYKKNY  120
VEAGDHAILE RKRRQKLTQL FISLSNILPG LKKMDKASLL GDTIQYMKEL QQRVKVLEKE  180
IKNNPSKRSL AAKVPSDVSL SEGSDYSSNE EDIVPEINVR ISDKSALIDI YCNKQGGVVG  240
RILSEMERLH LSVRDMNIMS FSRTSLDISV VAEMENGFDV NVEDIVKALQ SKLSGEIHYI  300
V
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129134ERKRRQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009606580.10.0PREDICTED: transcription factor bHLH25-like
TrEMBLA0A1S4D3T70.0A0A1S4D3T7_TOBAC; transcription factor bHLH25-like
STRINGXP_009606580.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1623655
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.14e-42bHLH family protein