PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009606377.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MIKC_MADS
Protein Properties Length: 182aa    MW: 21352.6 Da    PI: 9.8531
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009606377.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF871e-271059251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    ri+n+s rqvtfskRrng+lKKA+EL +LCda+v +iifsst klye+s+
  XP_009606377.1 10 RIDNSSSRQVTFSKRRNGLLKKAKELAILCDAQVGLIIFSSTEKLYEFSN 59
                    8***********************************************95 PP
2K-box73.94.5e-2581170998
           K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                     +  ++ + +q+e+a L++++++Lq+++R+++Ge+L  L++k+Lq+Le++Le+s++ iR kK+++l+++i+el  k   +++en +L +k+
  XP_009606377.1  81 NPVSELKLWQKEAAILRQQLQELQQNHRQVMGEQLYGLTIKDLQNLENRLETSIRGIRMKKEQILHDEIQELSLKGSLMHQENLELFHKV 170
                     45677899*****************************************************************************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.1E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.628161IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.36E-32290IPR002100Transcription factor, MADS-box
CDDcd002652.34E-42278No hitNo description
PRINTSPR004043.8E-27323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003196.0E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-273859IPR002100Transcription factor, MADS-box
PfamPF014864.4E-2285170IPR002487Transcription factor, K-box
PROSITE profilePS5129713.76886176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MGRGKIVIRR IDNSSSRQVT FSKRRNGLLK KAKELAILCD AQVGLIIFSS TEKLYEFSNT  60
SMKSVVERYN KTKDEHHQLQ NPVSELKLWQ KEAAILRQQL QELQQNHRQV MGEQLYGLTI  120
KDLQNLENRL ETSIRGIRMK KEQILHDEIQ ELSLKGSLMH QENLELFHKV NIIQQENVDL  180
YI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A4e-21183183MEF2 CHIMERA
6bz1_B4e-21183183MEF2 CHIMERA
6bz1_C4e-21183183MEF2 CHIMERA
6bz1_D4e-21183183MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009606377.11e-130PREDICTED: MADS-box transcription factor 27-like isoform X3
SwissprotQ6EP495e-91MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A1S3ZEC91e-118A0A1S3ZEC9_TOBAC; MADS-box transcription factor 23-like isoform X1
STRINGXP_009606375.11e-119(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.13e-85AGAMOUS-like 21
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]