PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009606198.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NAC

Protein Properties

Length: 292aa MW: 33768.9 Da PI: 6.521

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009606198.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	171.3	2.9e-53	9	134	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeel+++yL+ +++++++++ ++i+evd+yk++Pw+Lp+k++ +e+ewyfF++rd+ky++g r+nra+ sgyWkatg+dk+++s XP_009606198.1 9 LPPGFRFHPTDEELIMYYLRYQATSRPCPV-SIIPEVDLYKFDPWELPEKAEFGENEWYFFTPRDRKYPNGVRPNRAAVSGYWKATGTDKAIYS- 101 79**************************.89***********99999*************************************. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ vg+kk Lvfykg+ pkg+ktdW+mheyrl XP_009606198.1 102 ASKYVGVKKALVFYKGKPPKGVKTDWIMHEYRL 134 9999*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	9.02E-65	5	161	IPR003441	NAC domain
PROSITE profile	PS51005	60.935	9	161	IPR003441	NAC domain
Pfam	PF02365	5.2E-26	10	134	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MVGKISSDLP PGFRFHPTDE ELIMYYLRYQ ATSRPCPVSI IPEVDLYKFD PWELPEKAEF 60 GENEWYFFTP RDRKYPNGVR PNRAAVSGYW KATGTDKAIY SASKYVGVKK ALVFYKGKPP 120 KGVKTDWIMH EYRLNESRSQ PNKQSGSMRL DDWVLCRIYK KKNLGKTMEM MKAEEEEESE 180 AQIEITNNDI EVGATTSGPQ TSKLPRNCSL SHLLELDYFG SIPQLLGDNS YHTSFDNDQS 240 YTLMNNVNTN VVHQMEKSQL GEVSHQYNSQ NNNYNIFFNQ QPVFVNPAFQ FQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-72	9	163	17	167	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-72	9	163	17	167	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-72	9	163	17	167	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-72	9	163	17	167	NO APICAL MERISTEM PROTEIN
3ulx_A	1e-72	8	163	14	170	Stress-induced transcription factor NAC1
4dul_A	1e-72	9	163	17	167	NAC domain-containing protein 19
4dul_B	1e-72	9	163	17	167	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence and reduces fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. {ECO:0000269\|PubMed:29760199}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. {ECO:0000269\|PubMed:29760199}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009606198.1	0.0	PREDICTED: NAC transcription factor 29-like
Swissprot	K4BWV2	1e-164	NAP1_SOLLC; NAC domain-containing protein 1
TrEMBL	A0A1S3YG58	0.0	A0A1S3YG58_TOBAC; NAC transcription factor 29-like isoform X1
STRING	XP_009606198.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA746	24	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69490.1	1e-106	NAC-like, activated by AP3/PI

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Ma X, et al. The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato. Plant Physiol., 2018. 177(3): p. 1286-1302 [PMID:29760199]