PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009606112.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 188aa MW: 20442.1 Da PI: 6.4845

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009606112.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	66	8.9e-21	2	95	1	98
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +C++C+vlrr+C+++C+l+ ++ p +q++++ +v k+FG+s ++ +++a+pe++r+ A+ r+ +Pv Gavg++++++++++q+++ XP_009606112.1 2 SCNGCRVLRRRCSDNCTLRACLdgiddPRAQANATLFVSKFFGRSDLMAFIAAVPENRRP---------ACGRTVNPVTGAVGLLSTGNWHVCQKAV 89 6*******************************************************98.........89************************ PP DUF260 93 elallk 98 e++l++ XP_009606112.1 90 ETVLVG 95 998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	10.288	1	98	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.7E-17	2	92	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
MSCNGCRVLR RRCSDNCTLR ACLDGIDDPR AQANATLFVS KFFGRSDLMA FIAAVPENRR 60 PACGRTVNPV TGAVGLLSTG NWHVCQKAVE TVLVGGNLRP VFAGILTPYM NETFESFRCG 120 GAWDIPNQFS NKSGSFTDGS DHIDTTEWVG LEKRWNTTSS IGSETELSDV SLGLDSGNKE 180 PKLLNLFV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009606112.1	1e-137	PREDICTED: LOB domain-containing protein 38-like isoform X2
Refseq	XP_016477504.1	1e-137	PREDICTED: LOB domain-containing protein 38-like isoform X2
Swissprot	Q9SN23	1e-44	LBD38_ARATH; LOB domain-containing protein 38
TrEMBL	A0A1S4ALI4	1e-136	A0A1S4ALI4_TOBAC; LOB domain-containing protein 38-like isoform X2
STRING	XP_009606111.1	1e-134	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49940.1	4e-47	LOB domain-containing protein 38