PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009605930.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARF
Protein Properties Length: 660aa    MW: 72929.7 Da    PI: 6.5544
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009605930.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3711.5e-22131231198
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f k+lt+sd+++ g +++p+ +a+++         ++ +  tl  +d +g++W++++iyr++++r++lt+GW  Fv++++L +gD++vF   + +
  XP_009605930.1 131 FAKILTQSDANNGGGFSVPRYCADTIfprldysADPPVQ--TLLAKDVHGKTWKFRHIYRGTPRRHLLTTGWTTFVNSKKLVAGDSIVFL--RAE 221
                     89*********************999****996555545..8999*********************************************..347 PP

                     EE..EEEEE- CS
              B3  89 efelvvkvfr 98 
                     ++  +v+++r
  XP_009605930.1 222 NGDVCVGIRR 231
                     88889*9998 PP
2Auxin_resp105.27.6e-35276358183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aa+ a+++++Fev+++Prast+eF vk+++v++al+++++ GmRfkma+eteds    ++Gt+ +v+ +dp+rWp+S+Wr+L+
  XP_009605930.1 276 AANLAASGQPFEVTFYPRASTPEFFVKASSVKAALQIRWCSGMRFKMAVETEDSTMSWFMGTICSVQVADPIRWPDSPWRLLQ 358
                     7899****************************************************999**********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.89E-29122232IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.1E-36124233IPR015300DNA-binding pseudobarrel domain
CDDcd100171.85E-19130231No hitNo description
PROSITE profilePS5086313.056131233IPR003340B3 DNA binding domain
PfamPF023627.9E-21131231IPR003340B3 DNA binding domain
SMARTSM010192.6E-20131233IPR003340B3 DNA binding domain
PfamPF065075.9E-30276358IPR010525Auxin response factor
PROSITE profilePS5174515.214574654IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 660 aa     Download sequence    Send to blast
MKRVYCISTE SVNLKMITSK EEEEKWLDSK FWHACAGSIV QMPAVNSIVF YFPQGHAEHA  60
CGNVEFRSEI RIPSYIPCRV SGIKYMADQE NDEVFAKIRL TPVSSNEVEI VDDGVVAKSG  120
LDNDQENPTS FAKILTQSDA NNGGGFSVPR YCADTIFPRL DYSADPPVQT LLAKDVHGKT  180
WKFRHIYRGT PRRHLLTTGW TTFVNSKKLV AGDSIVFLRA ENGDVCVGIR RVKKGIAGGH  240
ETSFAVPYRG FSTFLRDDEN KLMKRGKVKA ESVIEAANLA ASGQPFEVTF YPRASTPEFF  300
VKASSVKAAL QIRWCSGMRF KMAVETEDST MSWFMGTICS VQVADPIRWP DSPWRLLQVT  360
WDEPDLLQHV KCVNPWLVEL VSNMPTVHFS PVSPQQKKPR LLQRSDFPLN CHLPMPGFPD  420
NHFLPNDTPA GMQGARHTQY GFSLSDLHLN KMHSSLFPVG FPPLDHAAAT PSPSNSTLIP  480
KPSSSDDMSC LLTLGSSTKT VTKSDCDKAP QLVLFGQPIF TEQQISLSSS GDTVSPVCAR  540
TSSSDGNADK IGNISDESGS TFDHRGLSEL NVEIGHCKVF IESEDVGQTL DLSVLGSYEA  600
LCKKLSNMFG IETSEVLNRV LYQDITGAVK QLGDEPFNDF VKTARRLTIL TDASSIGARE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A9e-812737951388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009605932.10.0PREDICTED: auxin response factor 18-like isoform X1
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A1S4C3B70.0A0A1S4C3B7_TOBAC; Auxin response factor
STRINGXP_009605930.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59224115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]