PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009605833.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 248aa    MW: 27522.8 Da    PI: 7.5467
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009605833.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.72.1e-13183228655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++Er RR ri +++ +L+el+P+     +k  + a++Le+AveY+k Lq
  XP_009605833.1 183 SIAERVRRTRISDRIRKLQELVPSM----DKQTNTADMLEEAVEYVKFLQ 228
                     689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.729177227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.19E-16180237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.50E-12181232No hitNo description
Gene3DG3DSA:4.10.280.101.7E-16182239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-10183228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.5E-13183233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042335Biological Processcuticle development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MQRGSGGGSG LSRYRSAPAT WLEALLESDT ENEVVLNPSS PILHSPNKPP PHPSTTQQQL  60
PELVKPETRF TGDPGLFESG GSSNFLRQQS SPAEFLSHIN SDGYFSSYGI PSSLNYISQP  120
IKRPREDDSE SSPRKLSAHL KGEPSGQSRG SGGSLDAEME KLMDDLVPCK VRAKRGCATH  180
PRSIAERVRR TRISDRIRKL QELVPSMDKQ TNTADMLEEA VEYVKFLQKQ IQELTEHQKK  240
CTCSEKDQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00181DAPTransfer from AT1G35460Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755183e-73HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009605833.10.0PREDICTED: transcription factor bHLH80-like isoform X2
SwissprotQ9C8P82e-69BH080_ARATH; Transcription factor bHLH80
TrEMBLA0A1S4DJJ20.0A0A1S4DJJ2_TOBAC; transcription factor bHLH81-like isoform X2
STRINGXP_009788006.11e-170(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.13e-56bHLH family protein