PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009605832.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 262aa    MW: 29198.8 Da    PI: 7.101
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009605832.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.76.6e-11183242655
                     HHHHHHHHHHHHHHHHHHHCTSCC.C............TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPk.as.........kapskKlsKaeiLekAveYIksLq 55 
                     +++Er RR ri +++ +L+el+P+ +            + +  + a++Le+AveY+k Lq
  XP_009605832.1 183 SIAERVRRTRISDRIRKLQELVPSmDKlmqfmigtdFCYPQQTNTADMLEEAVEYVKFLQ 242
                     689*********************888*******9944556699***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.068177241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-13180251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.65E-10181246No hitNo description
Gene3DG3DSA:4.10.280.101.5E-14182253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.2E-8183242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.4E-9183247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042335Biological Processcuticle development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MQRGSGGGSG LSRYRSAPAT WLEALLESDT ENEVVLNPSS PILHSPNKPP PHPSTTQQQL  60
PELVKPETRF TGDPGLFESG GSSNFLRQQS SPAEFLSHIN SDGYFSSYGI PSSLNYISQP  120
IKRPREDDSE SSPRKLSAHL KGEPSGQSRG SGGSLDAEME KLMDDLVPCK VRAKRGCATH  180
PRSIAERVRR TRISDRIRKL QELVPSMDKL MQFMIGTDFC YPQQTNTADM LEEAVEYVKF  240
LQKQIQELTE HQKKCTCSEK DQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00181DAPTransfer from AT1G35460Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755183e-73HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009605832.10.0PREDICTED: transcription factor bHLH80-like isoform X1
SwissprotQ9C8P84e-65BH080_ARATH; Transcription factor bHLH80
TrEMBLA0A1S4DJF80.0A0A1S4DJF8_TOBAC; transcription factor bHLH81-like isoform X1
STRINGXP_009605832.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA117871923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.14e-52bHLH family protein