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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009605702.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 222aa MW: 25146.4 Da PI: 7.4372 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 62.5 | 4.7e-20 | 20 | 68 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+i+n+ r+vtfskRr g++KKA+EL+ L +ae+ +++ s +++l+++ XP_009605702.1 20 KPIDNQNSRHVTFSKRRLGLFKKASELCMLSGAEIVILVQSLKQRLFTF 68 68**********************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 22.988 | 12 | 72 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.3E-25 | 12 | 71 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.01E-23 | 13 | 84 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-15 | 14 | 34 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.6E-18 | 22 | 68 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-15 | 34 | 49 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-15 | 49 | 70 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MNTTTKTVKK TQGRRKIEIK PIDNQNSRHV TFSKRRLGLF KKASELCMLS GAEIVILVQS 60 LKQRLFTFGH PNADAIIDRY LTGKSSSSSS TVDQLNVQQN NQYYSQICRE LEAEKKKKEI 120 IENSKIVNNN NEGFWWNEPI DDMGIEELEE SMGALEELKK KITMRADELS MINGSSVVPT 180 TSTVNNNIAR FGAEDQFLNQ AAIDYCSSIV PYQFNHPGDG QF |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009605702.1 | 1e-166 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A1J6L6Y0 | 1e-138 | A0A1J6L6Y0_NICAT; Agamous-like mads-box protein agl62 | ||||
STRING | XP_009605702.1 | 1e-165 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2134 | 22 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 2e-28 | AGAMOUS-like 62 |