PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009605688.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GRF | ||||||||
Protein Properties | Length: 356aa MW: 39641.9 Da PI: 7.8464 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 78.4 | 7.1e-25 | 83 | 127 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e+ XP_009605688.1 83 DPEPGRCRRTDGKKWRCSKDAYPDSKYCERHMHRGRNRSRKPVES 127 79****************************************986 PP | |||||||
2 | QLQ | 65.5 | 1.3e-22 | 22 | 57 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FTa Q+q+L++Q+++yKyL+a++PvPp+L+++i++ XP_009605688.1 22 PFTAVQWQELEHQAMIYKYLVAGLPVPPDLVVPIRR 57 9*********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 7.9E-13 | 21 | 57 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 24.343 | 22 | 57 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 4.4E-17 | 22 | 56 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.762 | 83 | 127 | IPR014977 | WRC domain |
Pfam | PF08879 | 4.2E-21 | 84 | 126 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 356 aa Download sequence Send to blast |
MSGSTSTSVV GGGGYGYGYR PPFTAVQWQE LEHQAMIYKY LVAGLPVPPD LVVPIRRSFE 60 AISARFFHHP SLGYCSYYGK KFDPEPGRCR RTDGKKWRCS KDAYPDSKYC ERHMHRGRNR 120 SRKPVESQSA SQSLSTSMSH ITTGSSNTRG SFQSSSCGSF QHMPLYSVAN SEELNYGSSA 180 TKLQMELVSY GIDNKDYRYL HGIAPDADEH NLSSETSATV RNLGMGTTMD STWVLPSQVS 240 SSPTARPKND SQLLGSSQQM HLPNLLEPMI DSTISKRRHQ HCFFGSEIDS PGTVKQEQQS 300 MRPFFNEWPT AKESWSNLDD EESNKNNFST TQLSISIPMA PSDFSSRSAC SPNGEN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY303171 | 0.0 | AY303171.1 Solanum bulbocastanum chromosome 8 clone UW177O13, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009605689.1 | 0.0 | PREDICTED: growth-regulating factor 4-like isoform X1 | ||||
Refseq | XP_016481857.1 | 0.0 | PREDICTED: growth-regulating factor 4-like isoform X1 | ||||
Refseq | XP_016481858.1 | 0.0 | PREDICTED: growth-regulating factor 4-like isoform X1 | ||||
TrEMBL | A0A1S4AYW5 | 0.0 | A0A1S4AYW5_TOBAC; growth-regulating factor 4-like isoform X1 | ||||
STRING | XP_009605688.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA743 | 23 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 1e-49 | growth-regulating factor 5 |