PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009605674.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 357aa    MW: 40245.1 Da    PI: 5.1221
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009605674.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.82.2e-14172219355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     + h   Er+RR+r+ ++f  L +l+P++     kKl+Ka+iL  A++YIk+L+
  XP_009605674.1 172 QDHVLSERKRRERLTQRFISLSTLIPNL-----KKLDKASILGDAIKYIKQLE 219
                     568899**********************.....9*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.132169218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.1E-12173219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.3E-18173234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.03E-17174238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.98E-14174223No hitNo description
SMARTSM003536.2E-16175224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MDMSSATWWS EMEIMNMNDL QYVEHCQTMT ASVDELPFDN NYPFSPCTYG IQAAEILEEK  60
PAFWSSRMET DHQNTYFSSP SPSTSPPPSS SSPSVISFCN TNSPSIQNYH ENLNSSVKTE  120
VPSGTTTINF SSQTSPDFDF DDSQHLFQAT GFGAGDINQK KSTYSRTPLQ AQDHVLSERK  180
RRERLTQRFI SLSTLIPNLK KLDKASILGD AIKYIKQLEN QVKSLEEETK KFSEEPVVAV  240
KRTRLLSTYD NSSSSDENSN TSSTNKSVPD IEVRAADGNV LIRIYCKKQA TIIKEIFSQV  300
EKFNLTIISN SVMPFGDIST YITIVAKMDY QLNMTAEYVA KRIREAIMKL ISSHIDV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1177182ERKRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009605673.10.0PREDICTED: transcription factor bHLH18
RefseqXP_009605674.10.0PREDICTED: transcription factor bHLH18
TrEMBLA0A1S4D2P90.0A0A1S4D2P9_TOBAC; transcription factor bHLH18-like
STRINGXP_009605673.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-42bHLH family protein