PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009605655.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | FAR1 | ||||||||
Protein Properties | Length: 178aa MW: 20687.7 Da PI: 10.9412 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 65.2 | 1.8e-20 | 12 | 97 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +Y+eYA ++GF +r+ +s+ks+r+g+i++r + C ++++ + ++++r r gC+a++ vk+ek g+w+v k++ +HnH+l+ XP_009605655.1 12 YYDEYAGRAGFITRVLSSRKSERDGSIISRGLGCRGIPDNQRSG---SIANQKRDRRRDGCTAMILVKREKPGTWVVRKFVRDHNHPLV 97 8*********************************7555555544...4588999999******************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.7E-18 | 12 | 97 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
MIFESEEAAR AYYDEYAGRA GFITRVLSSR KSERDGSIIS RGLGCRGIPD NQRSGSIANQ 60 KRDRRRDGCT AMILVKREKP GTWVVRKFVR DHNHPLVISP SKRRPTFDEK DKKIQELTAE 120 LRIKKRLSAA YREQLLSLMK DVDSHSEHMS TKVQAVRRIL KELETKKQEL SNRSRHHK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975518 | 1e-130 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009605654.1 | 1e-129 | PREDICTED: protein FAR1-RELATED SEQUENCE 2-like | ||||
Refseq | XP_018627619.1 | 1e-129 | PREDICTED: protein FAR1-RELATED SEQUENCE 2-like | ||||
TrEMBL | A0A1S4AQE7 | 1e-126 | A0A1S4AQE7_TOBAC; protein FAR1-RELATED SEQUENCE 2-like | ||||
STRING | XP_009605654.1 | 1e-128 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43280.1 | 9e-45 | FAR1 family protein |