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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009605433.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 254aa MW: 28447.6 Da PI: 7.7019 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.4 | 5.3e-13 | 56 | 102 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN +++Lr llP+ K +Ka+ L +Av+++++L XP_009605433.1 56 KSHSEAERRRRKRINGHLATLRNLLPNT-----IKTDKASLLAEAVRCVREL 102 69*************************8.....6**************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.307 | 53 | 102 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.9E-13 | 56 | 112 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.85E-11 | 56 | 104 | No hit | No description |
Pfam | PF00010 | 2.8E-10 | 56 | 102 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.05E-13 | 57 | 113 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.7E-11 | 59 | 108 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:3.30.70.260 | 1.5E-6 | 164 | 228 | No hit | No description |
CDD | cd04873 | 0.00174 | 164 | 225 | No hit | No description |
SuperFamily | SSF55021 | 2.29E-5 | 164 | 231 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MINDSFPSFY ELGGCSDSYN FLHGIINSSP EMFNVESSSV ISPRSMAEAK AIAANKSHSE 60 AERRRRKRIN GHLATLRNLL PNTIKTDKAS LLAEAVRCVR ELKKTTSELG ATISEDDDTD 120 DFMNYMGSND QATMKKFMFP SESDELNLSY CNSSDSGTLL VKATICCEDR PEIMMDLRRA 180 LSTVQGKIIR AEMATVGGRI KCILWVQMLE NGCREEGLVQ LRRALKVVMD KANFLAQNMG 240 QDLLGNKRPR LYHC |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975516 | 3e-52 | HG975516.1 Solanum lycopersicum chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009605433.1 | 0.0 | PREDICTED: transcription factor bHLH30-like | ||||
TrEMBL | A0A1S3ZYB9 | 0.0 | A0A1S3ZYB9_TOBAC; transcription factor bHLH30-like | ||||
STRING | XP_009605433.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7283 | 22 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68810.1 | 4e-37 | bHLH family protein |