PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009605433.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 254aa    MW: 28447.6 Da    PI: 7.7019
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009605433.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.45.3e-1356102354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     ++h+e+ErrRR+riN  +++Lr llP+       K +Ka+ L +Av+++++L
  XP_009605433.1  56 KSHSEAERRRRKRINGHLATLRNLLPNT-----IKTDKASLLAEAVRCVREL 102
                     69*************************8.....6**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.30753102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-1356112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.85E-1156104No hitNo description
PfamPF000102.8E-1056102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.05E-1357113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-1159108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2601.5E-6164228No hitNo description
CDDcd048730.00174164225No hitNo description
SuperFamilySSF550212.29E-5164231No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MINDSFPSFY ELGGCSDSYN FLHGIINSSP EMFNVESSSV ISPRSMAEAK AIAANKSHSE  60
AERRRRKRIN GHLATLRNLL PNTIKTDKAS LLAEAVRCVR ELKKTTSELG ATISEDDDTD  120
DFMNYMGSND QATMKKFMFP SESDELNLSY CNSSDSGTLL VKATICCEDR PEIMMDLRRA  180
LSTVQGKIIR AEMATVGGRI KCILWVQMLE NGCREEGLVQ LRRALKVVMD KANFLAQNMG  240
QDLLGNKRPR LYHC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755163e-52HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009605433.10.0PREDICTED: transcription factor bHLH30-like
TrEMBLA0A1S3ZYB90.0A0A1S3ZYB9_TOBAC; transcription factor bHLH30-like
STRINGXP_009605433.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA72832231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.14e-37bHLH family protein