PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009605406.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 468aa    MW: 52643.3 Da    PI: 8.0304
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009605406.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.49.2e-10353400448
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      WT  E  +l+d+v+q+G g+W+ I +       +Rt+ ++k++w+++l
   XP_009605406.1 353 WTVSEVRKLIDGVAQYGVGRWSHIKKLYFsssAHRTPVDLKDKWRNLL 400
                      ***************************999****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.975345404IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-13347405IPR009057Homeodomain-like
SuperFamilySSF466891.58E-16347409IPR009057Homeodomain-like
SMARTSM007171.0E-11349402IPR001005SANT/Myb domain
CDDcd116602.21E-20353401No hitNo description
PfamPF002498.6E-8353400IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MERKGVLYNI DSSIAAKREE EINQEVLDLK RSHFEAGKIQ AQNDLSAPCE DYLLDIEFAE  60
SITNLDYGSS RGLLDPILES QIPLSSCDGT DTCGMPYSSG LVVQESQSQN AMFGLTNSEL  120
HDLSRDKCES QILVEYNAVK FPTAFTPGDI SNVDDVAGFF AEAAYSEKMN ESVIDHSALT  180
SKGFSFMSNA MQNEGQIVNC EIFDMHESSA ISPPVTSQTM NIDAPLTKKR LRKPTRRYID  240
ESSDLNARRS RKREEVSTCA SASKDKFPRV RCQKKSRAES TEMELFPEES SCKAIQVPFA  300
SLVNEECDKR HASNAIQVMK AHKEATVVNP KDDATVPKKF DQDGVRRKHH RLWTVSEVRK  360
LIDGVAQYGV GRWSHIKKLY FSSSAHRTPV DLKDKWRNLL KACYLQKQSK ITEKGKHNLS  420
WRPLPKSVLH RVNELANMHP YPRNGRCKSS VSPCSSSSPL HTNRSNIQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754480.0HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009605406.10.0PREDICTED: uncharacterized protein LOC104099973 isoform X2
RefseqXP_016452321.10.0PREDICTED: uncharacterized protein LOC107776885 isoform X2
TrEMBLA0A1S3YJ990.0A0A1S3YJ99_TOBAC; uncharacterized protein LOC107776885 isoform X2
STRINGXP_009605404.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.12e-26TRF-like 6