PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009605338.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 216aa    MW: 25272.6 Da    PI: 5.8441
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009605338.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.45.8e-1955108457
                     -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
        Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                     ++++++eq++ Le+ F +++++ +e++ +LA++lgL+  qV vWFqNrRa++k+
  XP_009605338.1  55 KRKLSEEQVNLLEQSFGNEHKLETERKDKLASELGLDPHQVAVWFQNRRARYKN 108
                     45899***********************************************95 PP
2HD-ZIP_I/II115.33.5e-3754145293
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     +kr+ls+eqv+lLE+sF +e+kLe+erK +la+eLgl+p+qvavWFqnrRAR+k+k+lE++y++Lk++yd    e++rLe+ev +++e+l+e
  XP_009605338.1  54 RKRKLSEEQVNLLEQSFGNEHKLETERKDKLASELGLDPHQVAVWFQNRRARYKNKKLEQEYSKLKTQYDIAIVEKCRLENEVIKMKEQLSE 145
                     8***************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.79549109IPR001356Homeobox domain
SMARTSM003893.8E-1752113IPR001356Homeobox domain
SuperFamilySSF466893.76E-1754117IPR009057Homeodomain-like
CDDcd000867.24E-1454110No hitNo description
PfamPF000464.8E-1655108IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.3E-1956116IPR009057Homeodomain-like
PRINTSPR000311.7E-58089IPR000047Helix-turn-helix motif
PROSITE patternPS00027084107IPR017970Homeobox, conserved site
PRINTSPR000311.7E-589105IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MKNSMTHQLD DQMVLISQYY PDIYTQLVSE PGEAKQQRRR KKSKGEGSRS GVMRKRKLSE  60
EQVNLLEQSF GNEHKLETER KDKLASELGL DPHQVAVWFQ NRRARYKNKK LEQEYSKLKT  120
QYDIAIVEKC RLENEVIKMK EQLSEAENEI QKLLLERNCD GVSSNSPIST SSFTMDQPPF  180
LGEFGMEGML MDNLFFIAEN TYNYQEGLEW VNPVYI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13755RRRKKSKGEGSRSGVMRKR
23956RKKSKGEGSRSGVMRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009605338.11e-161PREDICTED: homeobox-leucine zipper protein ATHB-40-like
SwissprotO232081e-69ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
TrEMBLA0A1S4DI661e-158A0A1S4DI66_TOBAC; homeobox-leucine zipper protein ATHB-40-like
STRINGXP_009605338.11e-160(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12892480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.11e-64homeobox protein 40
Publications ? help Back to Top
  1. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]