PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009605333.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 250aa MW: 28538 Da PI: 9.8901 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33.4 | 8.3e-11 | 78 | 126 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 +Er+RR+++ +++Lr l+P+ +K s ++ Le+ v+YIk++ XP_009605333.1 78 VRRDVERQRRRDMARLYQRLRLLIPSkY---LMGKRSISDHLEEIVDYIKDM 126 56789*********************77...9******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.93E-10 | 73 | 145 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 12.265 | 74 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.9E-8 | 76 | 144 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.2E-8 | 78 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MDDSDQFDFA QVENLLHLLC SPPPPPPPPP TLIPRKQDSS ASLQTQSPKR KAAITNFDQD 60 AGKGKPPKEK KNTEKKVVRR DVERQRRRDM ARLYQRLRLL IPSKYLMGKR SISDHLEEIV 120 DYIKDMRKDI EELESKRERL KEMRNICSSD HISHLAAPAS SLKSDENQDR IRVKKCKEGV 180 EISVISNLGE GLTLSKVLRV LMEEGLLVIS CVSSKINQRS LHIIQSEVNS RGDIDLVGLQ 240 FKLMSLSYKL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009605333.1 | 0.0 | PREDICTED: transcription factor bHLH120-like | ||||
Refseq | XP_016512579.1 | 0.0 | PREDICTED: transcription factor bHLH120-like | ||||
TrEMBL | A0A1S4DH39 | 1e-180 | A0A1S4DH39_TOBAC; transcription factor bHLH120-like | ||||
STRING | XP_009605333.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12831 | 11 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25410.1 | 4e-20 | bHLH family protein |