PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009605311.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NF-YB | ||||||||
Protein Properties | Length: 200aa MW: 22270.4 Da PI: 4.3886 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 41.6 | 3e-13 | 28 | 122 | 7 | 96 |
NF-YB 7 flPianvsrimkkvlP...anakis..kdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 lP + v r++k l +++ is +d+ e + fi ++++ a+d c++ kr+tin++d++ al ++ f +++epl++ l+ +r+ +++ XP_009605311.1 28 GLPKTIVRRLVKDKLSqlsTDTDISllRDSLLAFSESARIFIHYLSATANDICKESKRQTINAEDVFKALEEIEFPEFIEPLRASLEVFRQRNSK 122 5777778888887654111556666446777788999*****************************************************97765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 4.1E-28 | 20 | 127 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 5.06E-22 | 28 | 136 | IPR009072 | Histone-fold |
Pfam | PF00808 | 4.3E-8 | 29 | 97 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 4.1E-28 | 160 | 163 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MAEIEKQKDK DKEKVPAAAA AVQIEQEGLP KTIVRRLVKD KLSQLSTDTD ISLLRDSLLA 60 FSESARIFIH YLSATANDIC KESKRQTINA EDVFKALEEI EFPEFIEPLR ASLEVFRQRN 120 SKRKSGSSKS TESNKKAKLK EPVENGKGKM KEQPSDTENE DGQAGEQPSD NENEEGQAAE 180 QPSDNENEDG QVEGEDSADE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975450 | 3e-39 | HG975450.1 Solanum pennellii chromosome ch11, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009605311.1 | 1e-142 | PREDICTED: DNA polymerase epsilon subunit 3 | ||||
TrEMBL | A0A1S4BHT5 | 1e-139 | A0A1S4BHT5_TOBAC; DNA polymerase epsilon subunit 3-like | ||||
STRING | XP_009605311.1 | 1e-141 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10161 | 24 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27470.1 | 2e-29 | nuclear factor Y, subunit B11 |