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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009605082.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | CO-like | ||||||||
Protein Properties | Length: 412aa MW: 45247.2 Da PI: 5.3505 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 19.6 | 1.9e-06 | 4 | 44 | 5 | 39 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 +C+ ++e++ + +C+++ +lC +C + H+ H++ XP_009605082.1 4 ICEFCGEQRSIVYCRSDAACLCLSCDRNVHSAnalserHSR 44 7*****************************65777777776 PP | |||||||
2 | zf-B_box | 22.9 | 1.7e-07 | 46 | 78 | 4 | 36 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36 +C++++++++ C + ++ lC++C ++H + XP_009605082.1 46 LICERCNSQPAVVRCIEEKTSLCQNCDWSGHAS 78 68*****************************65 PP | |||||||
3 | CCT | 59.7 | 9.7e-21 | 356 | 399 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R +a+lRYkeK+ktRkF+K++rY sRKa+A+ R RvKGrFvk+ XP_009605082.1 356 RSNAVLRYKEKKKTRKFDKRVRYVSRKARADVRRRVKGRFVKAG 399 899**************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.428 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 9.38E-8 | 4 | 47 | No hit | No description |
SMART | SM00336 | 6.0E-7 | 4 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 8.774 | 43 | 91 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 0.00112 | 47 | 73 | No hit | No description |
Pfam | PF06203 | 3.3E-15 | 356 | 398 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 15.021 | 356 | 398 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 412 aa Download sequence Send to blast |
MGYICEFCGE QRSIVYCRSD AACLCLSCDR NVHSANALSE RHSRTLICER CNSQPAVVRC 60 IEEKTSLCQN CDWSGHASSS SSGSTHMRQA LSSYTGCPSA AELSNSWSFL LDDPSIGASC 120 EQRMGTMSIK DNRPRDGQSP QGKENSQNMR AAVEVNDMDI SEKSNLLVES STPTLDNKQH 180 NVEPPIRSSN SAMSKGGYMG AKGSSLFEED PYCDNLIMDA VDLSIENYEE LFGASLNYPD 240 ELFENENFDD LFGMKDIKSA DSNCRGANAA EGSSIARVNT VQPTCSNAES ADSAMSCKTD 300 SILYFARQSS LSFSNQTGES TAGDHQDCGV SPMLVMGEPP PWGPPCPEPS SPSTSRSNAV 360 LRYKEKKKTR KFDKRVRYVS RKARADVRRR VKGRFVKAGD AYDYDPLPTR SY |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975451 | 1e-153 | HG975451.1 Solanum pennellii chromosome ch12, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009605082.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 9-like | ||||
Refseq | XP_009605083.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 9-like | ||||
Swissprot | Q9SSE5 | 1e-128 | COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9 | ||||
TrEMBL | A0A1S4AML0 | 0.0 | A0A1S4AML0_TOBAC; zinc finger protein CONSTANS-LIKE 9-like | ||||
STRING | XP_009605082.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1270 | 24 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07650.4 | 2e-90 | CONSTANS-like 9 |