PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009604784.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NAC

Protein Properties

Length: 421aa MW: 47611.8 Da PI: 8.5376

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009604784.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	160.3	7.5e-50	42	168	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 + pGfrF Ptdeel+++yLkkk+eg++ + evi+ev+i k+ePwdLp k++ ++++ew+fFs+r +ky++g++++rat+sgyWkatgk+++v+s XP_009604784.1 42 MFPGFRFCPTDEELISYYLKKKLEGSDKCV-EVISEVEIWKHEPWDLPdKSAVQSDNEWFFFSPRGRKYPNGSQSKRATESGYWKATGKERNVKS 135 579**********************777.99***********666667899********************************** PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +g+k+tLvf++grapkg++t+W+mhey + XP_009604784.1 136 -GSNMIGTKRTLVFHTGRAPKGQRTQWIMHEYCM 168 .99***************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.48E-56	39	185	IPR003441	NAC domain
PROSITE profile	PS51005	54.075	42	186	IPR003441	NAC domain
Pfam	PF02365	2.2E-26	44	167	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0071333	Biological Process	cellular response to glucose stimulus
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 421 aa Download sequence Send to blast
MEDGDVSGST DENKARKIVQ RSENINGNDK NVGISVATAS TMFPGFRFCP TDEELISYYL 60 KKKLEGSDKC VEVISEVEIW KHEPWDLPDK SAVQSDNEWF FFSPRGRKYP NGSQSKRATE 120 SGYWKATGKE RNVKSGSNMI GTKRTLVFHT GRAPKGQRTQ WIMHEYCMTG NSYYQDSVVV 180 CRLRKNNEFH LNDTQGNRRN HLAVDCSTAL SGAAQLDSLD LINGGECCSK EGSSSFSSHS 240 VEKVESGSES DKLTKVLPQH NSSSHWKDCD EEDCFADIMK DDIVKLDDSS YKARQNLLPI 300 VTRKLESSTK STPQEFQDLM SHRLPFQGTA NRRLRLQTEI VPRRVEAYEA NKKNSRAADT 360 TRRLMINIIP VRRIKQWSIP LLLVSLVLAV IFLCLFGVPQ QVKWLGHLLV ITPPEVNTRP 420 A

Sequence ? help Back to Top

Protein Sequence Length: 421 aa Download sequence Send to blast

MEDGDVSGST DENKARKIVQ RSENINGNDK NVGISVATAS TMFPGFRFCP TDEELISYYL  60
KKKLEGSDKC VEVISEVEIW KHEPWDLPDK SAVQSDNEWF FFSPRGRKYP NGSQSKRATE  120
SGYWKATGKE RNVKSGSNMI GTKRTLVFHT GRAPKGQRTQ WIMHEYCMTG NSYYQDSVVV  180
CRLRKNNEFH LNDTQGNRRN HLAVDCSTAL SGAAQLDSLD LINGGECCSK EGSSSFSSHS  240
VEKVESGSES DKLTKVLPQH NSSSHWKDCD EEDCFADIMK DDIVKLDDSS YKARQNLLPI  300
VTRKLESSTK STPQEFQDLM SHRLPFQGTA NRRLRLQTEI VPRRVEAYEA NKKNSRAADT  360
TRRLMINIIP VRRIKQWSIP LLLVSLVLAV IFLCLFGVPQ QVKWLGHLLV ITPPEVNTRP  420
A

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-43	38	187	13	166	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-43	38	187	13	166	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-43	38	187	13	166	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-43	38	187	13	166	NO APICAL MERISTEM PROTEIN
3swm_A	1e-43	38	187	16	169	NAC domain-containing protein 19
3swm_B	1e-43	38	187	16	169	NAC domain-containing protein 19
3swm_C	1e-43	38	187	16	169	NAC domain-containing protein 19
3swm_D	1e-43	38	187	16	169	NAC domain-containing protein 19
3swp_A	1e-43	38	187	16	169	NAC domain-containing protein 19
3swp_B	1e-43	38	187	16	169	NAC domain-containing protein 19
3swp_C	1e-43	38	187	16	169	NAC domain-containing protein 19
3swp_D	1e-43	38	187	16	169	NAC domain-containing protein 19
4dul_A	1e-43	38	187	13	166	NAC domain-containing protein 19
4dul_B	1e-43	38	187	13	166	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975445	2e-88	HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBank	HG975450	2e-88	HG975450.1 Solanum pennellii chromosome ch11, complete genome.
GenBank	HG975523	2e-88	HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009604784.1	0.0	PREDICTED: NAC domain-containing protein 60-like
TrEMBL	A0A1S4B496	0.0	A0A1S4B496_TOBAC; NAC domain-containing protein 60-like
STRING	XP_009604784.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4154	22	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G44290.1	4e-85	NAC domain containing protein 60