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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009604694.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 489aa MW: 53787.5 Da PI: 5.6533 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 44.6 | 2.6e-14 | 302 | 347 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr+++P+ +K++Ka+ L AveYI++L XP_009604694.1 302 NHVEAERQRREKLNHRFYALRSVVPHV-----TKMDKASLLSDAVEYINEL 347 799***********************8.....8***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 4.8E-54 | 31 | 207 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 17.422 | 298 | 347 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.28E-18 | 299 | 360 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.8E-18 | 301 | 362 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.99E-15 | 301 | 351 | No hit | No description |
Pfam | PF00010 | 9.3E-12 | 302 | 347 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.7E-17 | 304 | 353 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 489 aa Download sequence Send to blast |
MDELMVSSSS SSSSFSIPSL FSQTNQPLST LQQMLQYILK NQTDSWSYAI FWQTSNEDDG 60 RLFLAWGDGH FHGTKVKKGE VNGVNKASSL ERKNVIKGIQ ALICENGDGV VEGGDVTDIE 120 WFYVMSLAQS FSIGDGIPGK AFSTGSIVWL TGAQQLQFCS CERAKEAQVH GIETLVCIPT 180 SNGVLELGSS DLIKENWSLV QHVKSLFSLD QENGLEKTIS FADIGLVSCL QEDGQILGNN 240 KNNTSKKPKT GEIFSAAGTT LFQDSDHSDS DCQVLVDKPI VEKKTPKKRG RKPGATRETP 300 SNHVEAERQR REKLNHRFYA LRSVVPHVTK MDKASLLSDA VEYINELKAK VDDLELQLNN 360 KSESKKKLKV ESMDSTTLDN QSTTTTTTTS VDQIRPNSNS TSSFGPNNLT VEVEVKILGP 420 DAMIRVQSEN VNYPSARLMR ALQDLELHVH HASISSVNDL MLQDIVVKVP QCLGTENGLK 480 SALLSSLEQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rqw_A | 5e-41 | 30 | 210 | 8 | 195 | Transcription factor MYC3 |
4rqw_B | 5e-41 | 30 | 210 | 8 | 195 | Transcription factor MYC3 |
4rs9_A | 5e-41 | 30 | 210 | 8 | 195 | Transcription factor MYC3 |
4yz6_A | 5e-41 | 30 | 210 | 8 | 195 | Transcription factor MYC3 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GQ859154 | 0.0 | GQ859154.1 Nicotiana benthamiana bHLH3 transcription factor-like mRNA, partial sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009604694.1 | 0.0 | PREDICTED: transcription factor MYC3-like | ||||
TrEMBL | A0A1S4D3Z6 | 0.0 | A0A1S4D3Z6_TOBAC; transcription factor MYC3-like | ||||
STRING | XP_009604694.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1072 | 21 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00870.1 | 9e-69 | bHLH family protein |