PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009604694.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 489aa    MW: 53787.5 Da    PI: 5.6533
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009604694.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.62.6e-14302347454
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     +h e+Er+RR+++N++f  Lr+++P+      +K++Ka+ L  AveYI++L
  XP_009604694.1 302 NHVEAERQRREKLNHRFYALRSVVPHV-----TKMDKASLLSDAVEYINEL 347
                     799***********************8.....8***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.8E-5431207IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.422298347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.28E-18299360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.8E-18301362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.99E-15301351No hitNo description
PfamPF000109.3E-12302347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.7E-17304353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MDELMVSSSS SSSSFSIPSL FSQTNQPLST LQQMLQYILK NQTDSWSYAI FWQTSNEDDG  60
RLFLAWGDGH FHGTKVKKGE VNGVNKASSL ERKNVIKGIQ ALICENGDGV VEGGDVTDIE  120
WFYVMSLAQS FSIGDGIPGK AFSTGSIVWL TGAQQLQFCS CERAKEAQVH GIETLVCIPT  180
SNGVLELGSS DLIKENWSLV QHVKSLFSLD QENGLEKTIS FADIGLVSCL QEDGQILGNN  240
KNNTSKKPKT GEIFSAAGTT LFQDSDHSDS DCQVLVDKPI VEKKTPKKRG RKPGATRETP  300
SNHVEAERQR REKLNHRFYA LRSVVPHVTK MDKASLLSDA VEYINELKAK VDDLELQLNN  360
KSESKKKLKV ESMDSTTLDN QSTTTTTTTS VDQIRPNSNS TSSFGPNNLT VEVEVKILGP  420
DAMIRVQSEN VNYPSARLMR ALQDLELHVH HASISSVNDL MLQDIVVKVP QCLGTENGLK  480
SALLSSLEQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A5e-41302108195Transcription factor MYC3
4rqw_B5e-41302108195Transcription factor MYC3
4rs9_A5e-41302108195Transcription factor MYC3
4yz6_A5e-41302108195Transcription factor MYC3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ8591540.0GQ859154.1 Nicotiana benthamiana bHLH3 transcription factor-like mRNA, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009604694.10.0PREDICTED: transcription factor MYC3-like
TrEMBLA0A1S4D3Z60.0A0A1S4D3Z6_TOBAC; transcription factor MYC3-like
STRINGXP_009604694.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10722185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.19e-69bHLH family protein