PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009604641.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C2H2 | ||||||||
Protein Properties | Length: 172aa MW: 19495.5 Da PI: 10.0205 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.5 | 0.0001 | 89 | 111 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg+ Fs L H+r+H XP_009604641.1 89 HECSICGMEFSLGQALGGHMRRH 111 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 91 | 47 | 69 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 5.8E-9 | 47 | 71 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.09E-7 | 47 | 111 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 3.3E-4 | 86 | 112 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.067 | 89 | 111 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 1.2E-9 | 89 | 114 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.118 | 89 | 116 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 91 | 111 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MNAMKRSREE DRQVEAEAMA NCALMLLSRL NNNNNTTSTD RDYHNDFECK TCNKRFPSFQ 60 ALGGQRASHK RPRLLARDFL VQSKKNKMHE CSICGMEFSL GQALGGHMRR HRDEINNTSA 120 AAGKTMIPVL KKSNSSKRIF CGLDLNLTPD VDVELKLWPT ALVLSPVLRI FI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009604641.1 | 1e-127 | PREDICTED: zinc finger protein ZAT12-like | ||||
TrEMBL | A0A1S4B2I4 | 1e-118 | A0A1S4B2I4_TOBAC; zinc finger protein ZAT12-like | ||||
STRING | XP_009604641.1 | 1e-126 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA366 | 24 | 150 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37430.1 | 3e-34 | C2H2 family protein |