PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009604221.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 451aa    MW: 50573.2 Da    PI: 10.3711
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009604221.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2110.0014116138123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C  Cg+ Fs   +L  H+r+H
  XP_009604221.1 116 HECAFCGEEFSLGQTLGGHMRKH 138
                     78********************9 PP
2zf-C2H211.90.00069264286123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y+C  Cg+ Fs    L  H+r+H
  XP_009604221.1 264 YECAFCGEEFSLGQALGGHMRKH 286
                     99********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139124.7E-57999IPR007087Zinc finger, C2H2
SuperFamilySSF576673.86E-6114138No hitNo description
PROSITE profilePS501579.743116143IPR007087Zinc finger, C2H2
PfamPF139121.7E-5116140IPR007087Zinc finger, C2H2
SMARTSM003550.85116138IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280118138IPR007087Zinc finger, C2H2
PfamPF139121.8E-5157174IPR007087Zinc finger, C2H2
SuperFamilySSF576673.86E-6181208No hitNo description
PfamPF139121.9E-7186210IPR007087Zinc finger, C2H2
SMARTSM003550.43186208IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.66186213IPR007087Zinc finger, C2H2
PROSITE patternPS000280188208IPR007087Zinc finger, C2H2
SMARTSM00355210223245IPR015880Zinc finger, C2H2-like
PfamPF139123.5E-8227247IPR007087Zinc finger, C2H2
SuperFamilySSF576673.64E-6260289No hitNo description
Gene3DG3DSA:3.30.160.602.4E-4260287IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.8E-7264288IPR007087Zinc finger, C2H2
SMARTSM003550.17264286IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.45264291IPR007087Zinc finger, C2H2
PROSITE patternPS000280266286IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MHSWSEIKSE TTIKSELRRE NDEIREQMRT IGENHGHAFE RIHQLLTTMA VNTPALGLLV  60
ATPVNKNRDR ELGNPNQRTC KKQFKCFQAL GGHRASHKKT KFNRVADPIK PNKKKHECAF  120
CGEEFSLGQT LGGHMRKHRD KVGELQKHKQ QEHKQLTCKK QFKSFQALGG HRTSRADPIK  180
PNKKNHECAF CGEEFSLGQA LGGHMRKHRD KVGELQKHKQ QEHKQLTCKK QFKSLQALGG  240
HRASHKKIKF NRVTDPIKPN KKKYECAFCG EEFSLGQALG GHMRKHRDKV GELQKHKQQD  300
SEENSAGEVV ETTEKKIPGA EKALFLDMNL TLYENELMLG IIPLRIQVWG PVISSKLAYW  360
IIFERQVGPA QALSIPIMIP GLQEAIAQIL TVCTSLAQAV SVPAAPATSQ ARGGNQTPTA  420
RTLEQLAQGN KTLGVLPVQS VAADRAELVP I
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor involved in light acclimation, cold and oxidative stress responses. May regulate a collection of transcripts involved in response to high-light, cold and oxidative stress. {ECO:0000269|PubMed:11069694, ECO:0000269|PubMed:14722088, ECO:0000269|PubMed:15634197, ECO:0000269|PubMed:16183833}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By H(2)O(2), cold, drought, cold or heat stresses, wounding, cucumber mosaic virus (CMV), exposure to high-intensity light and low-oxygen conditions in roots. {ECO:0000269|PubMed:12368499, ECO:0000269|PubMed:14722088, ECO:0000269|PubMed:15634197, ECO:0000269|PubMed:16183833, ECO:0000269|PubMed:18201973, ECO:0000269|PubMed:18922600}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009594752.14e-64PREDICTED: zinc finger protein ZAT11-like
RefseqXP_016508475.14e-64PREDICTED: zinc finger protein ZAT11-like
SwissprotQ424102e-15ZAT12_ARATH; Zinc finger protein ZAT12
TrEMBLA0A1S4D4X41e-62A0A1S4D4X4_TOBAC; zinc finger protein ZAT11-like
STRINGXP_009604221.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36624150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.12e-18C2H2 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Shi H,Chan Z
    The cysteine2/histidine2-type transcription factor ZINC FINGER OF ARABIDOPSIS THALIANA 6-activated C-REPEAT-BINDING FACTOR pathway is essential for melatonin-mediated freezing stress resistance in Arabidopsis.
    J. Pineal Res., 2014. 57(2): p. 185-91
    [PMID:24962049]
  3. Munekage YN,Inoue S,Yoneda Y,Yokota A
    Distinct palisade tissue development processes promoted by leaf autonomous signalling and long-distance signalling in Arabidopsis thaliana.
    Plant Cell Environ., 2015. 38(6): p. 1116-26
    [PMID:25293694]
  4. Le CT, et al.
    ZINC FINGER OF ARABIDOPSIS THALIANA12 (ZAT12) Interacts with FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR (FIT) Linking Iron Deficiency and Oxidative Stress Responses.
    Plant Physiol., 2016. 170(1): p. 540-57
    [PMID:26556796]
  5. Ben Daniel BH, et al.
    Identification of novel transcriptional regulators of Zat12 using comprehensive yeast one-hybrid screens.
    Physiol Plant, 2016. 157(4): p. 422-41
    [PMID:26923089]
  6. Tang Y, et al.
    Oxidative stress-induced toxicity of CuO nanoparticles and related toxicogenomic responses in Arabidopsis thaliana.
    Environ. Pollut., 2016. 212: p. 605-614
    [PMID:27016889]
  7. Corrales AR, et al.
    Multifaceted role of cycling DOF factor 3 (CDF3) in the regulation of flowering time and abiotic stress responses in Arabidopsis.
    Plant Cell Environ., 2017. 40(5): p. 748-764
    [PMID:28044345]
  8. Xu J,Tran T,Padilla Marcia CS,Braun DM,Goggin FL
    Superoxide-responsive gene expression in Arabidopsis thaliana and Zea mays.
    Plant Physiol. Biochem., 2017. 117: p. 51-60
    [PMID:28587993]
  9. Nguyen HM, et al.
    Ethanol Enhances High-Salinity Stress Tolerance by Detoxifying Reactive Oxygen Species in Arabidopsis thaliana and Rice.
    Front Plant Sci, 2017. 8: p. 1001
    [PMID:28717360]