PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009604177.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 277aa    MW: 31020.1 Da    PI: 9.2839
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009604177.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.31.5e-12556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++WT eE+e l  +v+++G g Wk I r          R+  ++k++w+++
   XP_009604177.1  5 KQKWTSEEEEALRAGVAKHGAGKWKNIQRDPEfnhllYSRSNIDLKDKWRNL 56
                     79***********************************9************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.042161IPR017930Myb domain
SMARTSM007171.5E-8459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.8E-14556IPR009057Homeodomain-like
SuperFamilySSF466893.36E-14664IPR009057Homeodomain-like
CDDcd116602.71E-20657No hitNo description
PfamPF139211.7E-8862No hitNo description
SuperFamilySSF467851.09E-14115197IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005268.0E-15115180IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150424.265117185IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.102.2E-13117190IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005389.9E-10120177IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MGNPKQKWTS EEEEALRAGV AKHGAGKWKN IQRDPEFNHL LYSRSNIDLK DKWRNLNVSA  60
NGQGPRDKSR TQKVKADAPA APLLITQAPV SSTPVLQDAA ADTIMEDSSK CALDGKTTSK  120
YNQMIYDALS SLKEPNGSDT STIVNFIEQR HEVPQNFRRL LSSRLRRLVQ QDKLEKFENC  180
YRIKKEVLER TKTATPKQKH VGPRQFPSST YLGDTVEEAA KTAVYKVAEA DNKSFVAAEA  240
AKEEARVSKM AEDQDSLLLL AKDIFDRCSH GEIVLMA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754462e-34HG975446.1 Solanum pennellii chromosome ch07, complete genome.
GenBankHG9755192e-34HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009604177.10.0PREDICTED: telomere repeat-binding factor 4-like
RefseqXP_016469797.10.0PREDICTED: telomere repeat-binding factor 4-like
TrEMBLA0A1S3ZZC30.0A0A1S3ZZC3_TOBAC; telomere repeat-binding factor 4-like
STRINGXP_009604177.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25042355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.15e-67MYB_related family protein