PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009603861.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family CO-like
Protein Properties Length: 420aa    MW: 47656.1 Da    PI: 4.7999
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009603861.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box28.92.3e-091760340
        zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                    +r C+ + +k++++fC  ++ +lC++C ++ H+       H++v
  XP_009603861.1 17 ARACDSCLSKRARWFCPADDAFLCQSCDVSVHSAnqlasrHERV 60
                    578*****************************667888888876 PP
2CCT67.53.6e-23362405144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     Re++++RY+eKr+tR+F+KkirY++RK +Ae+RpR+KGrFvk++
  XP_009603861.1 362 REERVSRYREKRRTRLFSKKIRYQVRKLNAEKRPRLKGRFVKRT 405
                     9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003367.8E-121562IPR000315B-box-type zinc finger
PROSITE profilePS5011910.9641562IPR000315B-box-type zinc finger
PfamPF006431.1E-71760IPR000315B-box-type zinc finger
CDDcd000217.53E-111862No hitNo description
PROSITE profilePS5101715.924362404IPR010402CCT domain
PfamPF062037.2E-18362404IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MMTSESKTAN AIGGKTARAC DSCLSKRARW FCPADDAFLC QSCDVSVHSA NQLASRHERV  60
RLETSSNKST DTKFVDQTVS QPSWHQGFTR KARTPRNGKN KSTQIGQRKK DEENMVPEMG  120
SEENSPDENE FENEEQLLYR VPVFDPFEAE LCCTVPNEVV DETTTINDLD ILLNSEDVCD  180
DLGIPEFLSS EIELAEFAAD VESLLGEEFR VVAEEEEQSR LINGSVEDNK AIKIEVEDEE  240
MRAVVACHLD PELDMAREAL NWDFEYEETV EQKVNMTAAT EFVPSAECGG SKADAKRRLL  300
LRLNYEAVIS AWPNQSSPWT NGIRPHFNPD DCWPDFLETC IGEGGVHQPY GGGKVRGGDG  360
GREERVSRYR EKRRTRLFSK KIRYQVRKLN AEKRPRLKGR FVKRTTSFSP PGFPYLMNKR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1372388RRTRLFSKKIRYQVRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009603861.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 16-like
TrEMBLA0A1S3X5190.0A0A1S3X519_TOBAC; zinc finger protein CONSTANS-LIKE 16-like
STRINGXP_009603861.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15392470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.12e-73B-box type zinc finger protein with CCT domain