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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
XP_009603861.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family |
CO-like |
Protein Properties |
Length: 420aa MW: 47656.1 Da PI: 4.7999 |
Description |
CO-like family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
XP_009603861.1 | genome | NCBI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-B_box | 28.9 | 2.3e-09 | 17 | 60 | 3 | 40 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
+r C+ + +k++++fC ++ +lC++C ++ H+ H++v
XP_009603861.1 17 ARACDSCLSKRARWFCPADDAFLCQSCDVSVHSAnqlasrHERV 60
578*****************************667888888876 PP
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2 | CCT | 67.5 | 3.6e-23 | 362 | 405 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44
Re++++RY+eKr+tR+F+KkirY++RK +Ae+RpR+KGrFvk++
XP_009603861.1 362 REERVSRYREKRRTRLFSKKIRYQVRKLNAEKRPRLKGRFVKRT 405
9*****************************************86 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 420 aa
Download sequence Send
to blast |
MMTSESKTAN AIGGKTARAC DSCLSKRARW FCPADDAFLC QSCDVSVHSA NQLASRHERV 60 RLETSSNKST DTKFVDQTVS QPSWHQGFTR KARTPRNGKN KSTQIGQRKK DEENMVPEMG 120 SEENSPDENE FENEEQLLYR VPVFDPFEAE LCCTVPNEVV DETTTINDLD ILLNSEDVCD 180 DLGIPEFLSS EIELAEFAAD VESLLGEEFR VVAEEEEQSR LINGSVEDNK AIKIEVEDEE 240 MRAVVACHLD PELDMAREAL NWDFEYEETV EQKVNMTAAT EFVPSAECGG SKADAKRRLL 300 LRLNYEAVIS AWPNQSSPWT NGIRPHFNPD DCWPDFLETC IGEGGVHQPY GGGKVRGGDG 360 GREERVSRYR EKRRTRLFSK KIRYQVRKLN AEKRPRLKGR FVKRTTSFSP PGFPYLMNKR
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Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 372 | 388 | RRTRLFSKKIRYQVRKL |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT1G25440.1 | 2e-73 | B-box type zinc finger protein with CCT domain |