PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009603775.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 216aa    MW: 24283.1 Da    PI: 4.1415
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009603775.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.84.7e-1453139196
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     ffkv ++++++k++   +p +f+ e+g +      ++le ++g  W+vkl  +++sg+ +l++GW++F +   +  g f++F+++g+s f   v 
  XP_009603775.1  53 FFKVILSPHASKLH---IPDEFVMEYGVD--LRDVVSLEVPDGAMWKVKL--QNCSGMAWLKEGWNRFKEYYSIGCGYFLLFRYNGNSHF--SVF 138
                     88888888888876...*********866..4558***************..*********************************99999..555 PP

                     E CS
              B3  96 v 96 
                     +
  XP_009603775.1 139 I 139
                     5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.0E-2147143IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.27950143IPR003340B3 DNA binding domain
SuperFamilySSF1019363.34E-2250150IPR015300DNA-binding pseudobarrel domain
CDDcd100176.13E-1751141No hitNo description
SMARTSM010191.7E-1253143IPR003340B3 DNA binding domain
PfamPF023622.5E-1153139IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MSPDEGIDFS HCSLNKQNFD ITSSHKEQTA ETAERRLPEE PKPVDSPETP PQFFKVILSP  60
HASKLHIPDE FVMEYGVDLR DVVSLEVPDG AMWKVKLQNC SGMAWLKEGW NRFKEYYSIG  120
CGYFLLFRYN GNSHFSVFIF DLSASEIDYP PGPNEDEISP GLNEDLTPEI SPGPNENLAP  180
ENLCVVAEPE ENPLTCQENS CAETLLMISQ PSRPNV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016483682.11e-160PREDICTED: B3 domain-containing protein At1g49475-like
TrEMBLA0A1S4B4301e-159A0A1S4B430_TOBAC; B3 domain-containing protein At1g49475-like
STRINGXP_009603775.11e-159(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA132901215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.18e-27B3 family protein