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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009603673.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ARR-B | ||||||||
Protein Properties | Length: 606aa MW: 67330.6 Da PI: 5.9368 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 76.6 | 3.3e-24 | 203 | 256 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k++++Wt+ LH++F+ea++ + G +kA+Pk+il+ mkv+gLt+e+v+SHLQkYR+ XP_009603673.1 203 KAKVVWTNSLHNKFLEAIRDI-GFDKAVPKKILDQMKVPGLTRENVASHLQKYRI 256 6799*****************.********************************6 PP | |||||||
2 | Response_reg | 71.8 | 2.7e-24 | 13 | 121 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 +l+vdD+ + +++++ +l+k +y +v +++++ +al +l+ k +Dl+++D+ mp+m+G+el + i++e +lp+++++a ++e ++l+ l+ G XP_009603673.1 13 ILVVDDDVVCLSIVAMILKKCKY-QVVTVKHPMDALSILRIKGgsFDLVVVDVHMPDMNGFELQQVITNEF-ELPVVLMSADDKEGTILKGLDGG 105 89*********************.9999***********666666**********************9999.9********************** PP ESEEEESS--HHHHHH CS Response_reg 94 akdflsKpfdpeelvk 109 a fl+Kp++ ++l++ XP_009603673.1 106 AAFFLVKPISVDDLRD 121 *************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.40.50.2300 | 1.4E-32 | 10 | 134 | No hit | No description |
SuperFamily | SSF52172 | 1.37E-30 | 10 | 127 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 3.8E-25 | 11 | 123 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 36.389 | 12 | 127 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 1.4E-20 | 13 | 121 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 3.26E-23 | 14 | 127 | No hit | No description |
PROSITE profile | PS51294 | 10.567 | 200 | 259 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.96E-18 | 201 | 260 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.6E-24 | 202 | 260 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.6E-24 | 203 | 256 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 5.4E-6 | 206 | 255 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 606 aa Download sequence Send to blast |
MEVETLINKS ISILVVDDDV VCLSIVAMIL KKCKYQVVTV KHPMDALSIL RIKGGSFDLV 60 VVDVHMPDMN GFELQQVITN EFELPVVLMS ADDKEGTILK GLDGGAAFFL VKPISVDDLR 120 DLWQYALLQK KKGKRVVLEE IDCLEKSSNC NKKSLHEVRE SVSSINENCY QHIKKEKSKR 180 KSARTQRNAD KDNSGNSAAP FKKAKVVWTN SLHNKFLEAI RDIGFDKAVP KKILDQMKVP 240 GLTRENVASH LQKYRIFLER VSDACCRIQA ADTGLGMLSQ EKFGRQKQFS ENTTNPRSLI 300 HTANNGSSSF RTQQTRQTIP SGYEQAQLFL HEDNLGNITH SNENPLYKAN QLPSTMKAKN 360 YQTGSSAYED ISSQLMNGTT STQVRRMLSG NPANRLSARN LLALGTNGIT MHATLNGNLN 420 FLRDGFADDQ CGTNFTQNND ADEASTLFAG HMNFIGKSQH DSEQCLAQEA SSSDGFDGEK 480 QCSAILSDHI DEETYMQLPS FVNGVCRGQE VDAMLDPVCN FSEFHNTNAT QQSRGIGDLS 540 VSFVNQGNVQ PHQQKDHIGH TEPAEDGMSQ LHNVFSYPTE QCKDEGFLEL ILASSPYEDD 600 QNPDGL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 2e-19 | 202 | 262 | 4 | 64 | ARR10-B |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC149488 | 5e-37 | AC149488.1 Solanum demissum chromosome 11 clone PGEC542, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009603673.1 | 0.0 | PREDICTED: putative two-component response regulator ARR21 isoform X2 | ||||
TrEMBL | A0A1S3XYK0 | 0.0 | A0A1S3XYK0_TOBAC; two-component response regulator ORR24-like isoform X3 | ||||
STRING | XP_009603673.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3290 | 20 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16110.1 | 9e-52 | response regulator 2 |