PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009603664.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Trihelix

Protein Properties

Length: 374aa MW: 41631 Da PI: 10.4595

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009603664.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	50.2	6.7e-16	100	190	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ +++Liea ++ +l+rg+l+ ++W+ev++++ + ++ r+ +qCk++++ l+k+yk +k++ ++ + + +st+p+f++l+ XP_009603664.1 100 CWSEAATHTLIEAWGSKYVELNRGNLRHQQWQEVADAVnalhgHTKKQYRTDIQCKNRIDTLKKKYKIEKTRVSQSQGRYVSTWPFFSSLN 190 7***********************************999987778889*********************9999******9985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	6.4E-25	98	190	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence Send to blast
MFRRHGHTNN PSPHSSSNPN SSTTSHFLSA GAAAASRSRT MSDDDDHLAS PFSIKNSPSS 60 SPSPPPPCTD DKLLALPPPP MLTPASVSAR TPIFPAREDC WSEAATHTLI EAWGSKYVEL 120 NRGNLRHQQW QEVADAVNAL HGHTKKQYRT DIQCKNRIDT LKKKYKIEKT RVSQSQGRYV 180 STWPFFSSLN PLIGVTYKVS PSPSPETFIP QRRKSPSPSP ATFTPQWRSS PPLLPPPLFG 240 IPVGLRSKRP AAAMDYTVSR RNFSAMAAAA AAASEDSGEE DEEGLEKSSR KRSGGVVVEG 300 GGYRRIAEAI GRFGEIYERV EKAKQRQMVE LEKQRMQFAK DLEIQRMKLI MESQLHLQKL 360 NRSKPHFTSR QSQT

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence Send to blast

MFRRHGHTNN PSPHSSSNPN SSTTSHFLSA GAAAASRSRT MSDDDDHLAS PFSIKNSPSS  60
SPSPPPPCTD DKLLALPPPP MLTPASVSAR TPIFPAREDC WSEAATHTLI EAWGSKYVEL  120
NRGNLRHQQW QEVADAVNAL HGHTKKQYRT DIQCKNRIDT LKKKYKIEKT RVSQSQGRYV  180
STWPFFSSLN PLIGVTYKVS PSPSPETFIP QRRKSPSPSP ATFTPQWRSS PPLLPPPLFG  240
IPVGLRSKRP AAAMDYTVSR RNFSAMAAAA AAASEDSGEE DEEGLEKSSR KRSGGVVVEG  300
GGYRRIAEAI GRFGEIYERV EKAKQRQMVE LEKQRMQFAK DLEIQRMKLI MESQLHLQKL  360
NRSKPHFTSR QSQT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009603664.2	0.0	PREDICTED: trihelix transcription factor ASIL1-like isoform X1
TrEMBL	A0A1S3ZQP4	0.0	A0A1S3ZQP4_TOBAC; trihelix transcription factor ASIL2-like
TrEMBL	A0A1U7XBV8	0.0	A0A1U7XBV8_NICSY; ras guanine nucleotide exchange factor Y-like
STRING	XP_009603664.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1318	23	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58630.1	1e-64	sequence-specific DNA binding transcription factors