PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009603358.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 107aa    MW: 12426.1 Da    PI: 9.134
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009603358.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.45.2e-081767655
                    HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                    + +Er+RR  ++   ++L +++P+  +k++ + ls  + + +A+ YI +L+
  XP_009603358.1 17 KTVERNRRIYMKYLCSKLISVIPPrHFKPSTEMLSQQDQVDQAITYIEQLK 67
                    679*********************776555555****************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.108.9E-71680IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.1E-81680IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-41766IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 107 aa     Download sequence    Send to blast
MESSSKYNIS SEKPDRKTVE RNRRIYMKYL CSKLISVIPP RHFKPSTEML SQQDQVDQAI  60
TYIEQLKERV EVLNRRKDEE AQGTGERSSN SKKVMTTCTL ETPAVEV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009618665.16e-66PREDICTED: transcription factor ORG3-like
RefseqXP_016456924.16e-66PREDICTED: transcription factor ORG3-like
TrEMBLA0A1S3YXK01e-64A0A1S3YXK0_TOBAC; transcription factor ORG3-like
STRINGXP_009603358.14e-73(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA60831423
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.14e-12bHLH family protein