PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009603278.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 79aa    MW: 8911.97 Da    PI: 8.8937
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009603278.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding347e-11852344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     +WT+ E +++ +a + + ++   +W  Ia+++g g++ +++k ++
   XP_009603278.1  8 AWTPKENKKFEQALAVYDKDtpdRWQNIAKYVGGGKSVEDVKQHY 52
                     7*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129311.12460IPR017884SANT domain
SMARTSM007171.1E-8558IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.8E-6853IPR009057Homeodomain-like
CDDcd001674.54E-8852No hitNo description
SuperFamilySSF466891.22E-13863IPR009057Homeodomain-like
PfamPF002492.6E-9852IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 79 aa     Download sequence    Send to blast
MASNSLSAWT PKENKKFEQA LAVYDKDTPD RWQNIAKYVG GGKSVEDVKQ HYAILIEDLK  60
HIESGDVPFP KYRSGGNSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A7e-29177179RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009603278.12e-53PREDICTED: protein RADIALIS-like 1
RefseqXP_016451407.12e-53PREDICTED: protein RADIALIS-like 1
RefseqXP_016451408.12e-53PREDICTED: protein RADIALIS-like 1
RefseqXP_018627017.12e-53PREDICTED: protein RADIALIS-like 1
RefseqXP_019242704.12e-53PREDICTED: protein RADIALIS-like 1
SwissprotQ1A1732e-29RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A1J6J4174e-52A0A1J6J417_NICAT; Protein radialis-like 1
TrEMBLA0A1S3YH964e-52A0A1S3YH96_TOBAC; protein RADIALIS-like 1
STRINGXP_009603278.16e-53(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.27e-32RAD-like 6