PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009603158.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C2H2 | ||||||||
Protein Properties | Length: 501aa MW: 55537.8 Da PI: 9.6832 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.3 | 0.00012 | 65 | 85 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ C+k F r nL+ H r H XP_009603158.1 65 CEVCNKGFQREQNLQLHRRGH 85 *******************88 PP | |||||||
2 | zf-C2H2 | 14.6 | 9.3e-05 | 140 | 162 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ XP_009603158.1 140 FKCEKCSKKYAVQSDWKAHTKTC 162 89*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 9.5E-6 | 62 | 85 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.18E-7 | 62 | 85 | No hit | No description |
SMART | SM00355 | 0.025 | 63 | 85 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.97 | 63 | 85 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 65 | 85 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 240 | 105 | 135 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 3.5E-5 | 128 | 161 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.18E-7 | 135 | 160 | No hit | No description |
SMART | SM00355 | 88 | 140 | 160 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 501 aa Download sequence Send to blast |
MNIQQEVLLQ KQQYSLAPSS SMVQTQAQAA PTKKRRNQPG TTPYPDAEVI ALSPKTLMAT 60 NRFLCEVCNK GFQREQNLQL HRRGHNLPWK LKQKNTKEVV KRKVYLCPEI TCVHHETSRA 120 LGDLTGIKKH YFRKHGEKKF KCEKCSKKYA VQSDWKAHTK TCGTREYKCD CGTIFSRRDS 180 FITHRAFCDA LAQETARNPV PNFSTIGSHL YGSNSNINLG NFSKMQNSTI SDQKLSLGNT 240 NHNLIGTSNI GSSTSNSFFF QESNQDYANI KPIHSLMQLP NFHNNNMFNL NFFQNNDGNI 300 NLPSGILGDQ NISCSIPSLY GSQVQNHNLN NTTSSVAPMS ATALLQKAAQ IGSTTSNIST 360 TASLLKAFGN STNGGNSSSS GTKSDHQAVN FGDIFSDHSE NHLPEINGEA GNFGPTGDIV 420 NVFNAYGHDQ NDYGGGYNKA TKLNFEQQQH QLPLQKKQLT RDFLGVGEIV RRSMSGGFSS 480 QREQQQQQQS KQGFASAGNF Q |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 4e-33 | 136 | 197 | 3 | 64 | Zinc finger protein JACKDAW |
5b3h_F | 4e-33 | 136 | 197 | 3 | 64 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000305|PubMed:19726569}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00256 | DAP | Transfer from AT2G02080 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by gibberellin. {ECO:0000305|PubMed:17933900}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009603158.1 | 0.0 | PREDICTED: protein indeterminate-domain 5, chloroplastic-like isoform X1 | ||||
Refseq | XP_016509335.1 | 0.0 | PREDICTED: protein indeterminate-domain 5, chloroplastic-like | ||||
Refseq | XP_018626985.1 | 0.0 | PREDICTED: protein indeterminate-domain 5, chloroplastic-like isoform X1 | ||||
Swissprot | Q8GYC1 | 1e-123 | IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic | ||||
TrEMBL | A0A1S4D7B8 | 0.0 | A0A1S4D7B8_TOBAC; protein indeterminate-domain 5, chloroplastic-like | ||||
STRING | XP_009603158.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA103 | 24 | 350 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02080.1 | 1e-102 | indeterminate(ID)-domain 4 |
Publications ? help Back to Top | |||
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