PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009602953.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARF
Protein Properties Length: 696aa    MW: 77170.2 Da    PI: 7.5278
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009602953.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.61.3e-24113214199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f k+lt+sd+++ g +++p+ +ae++         ++ +  t++ +d +g++W++++iyr++++r++lt+GW++Fv++++L +gD++vF   + +
  XP_009602953.1 113 FAKTLTQSDANNGGGFSVPRYCAETIfprldytADPPVQ--TVIAKDVHGETWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFL--RAE 203
                     89****************************997556555..8************************************************..449 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     ++el+v+++r+
  XP_009602953.1 204 NGELCVGIRRA 214
                     999******97 PP
2Auxin_resp116.42.5e-38273356183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                     aa  a+++++FevvY+Prast+eF+v+v++v++a++v+++ GmRfkmafetedss++++ +Gt+++++ +dp++WpnS+Wr+L+
  XP_009602953.1 273 AAYLAASGQPFEVVYYPRASTPEFCVRVSSVNTAMRVHWCSGMRFKMAFETEDSSRISWfMGTISSIQVADPIHWPNSPWRLLQ 356
                     577899****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.0E-38107220IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.22E-29108216IPR015300DNA-binding pseudobarrel domain
CDDcd100175.62E-23112213No hitNo description
PROSITE profilePS5086313.535113215IPR003340B3 DNA binding domain
PfamPF023621.3E-22113214IPR003340B3 DNA binding domain
SMARTSM010191.1E-23113215IPR003340B3 DNA binding domain
PfamPF065072.2E-33273356IPR010525Auxin response factor
PROSITE profilePS5174514.769585665IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0009743Biological Processresponse to carbohydrate
GO:0010154Biological Processfruit development
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0048366Biological Processleaf development
GO:0048441Biological Processpetal development
GO:0048442Biological Processsepal development
GO:0048589Biological Processdevelopmental growth
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 696 aa     Download sequence    Send to blast
MKEVAEKCVD SQLWHACAGG MVQIPPVNSK VYYFPQGHAE HTLVNVDFST LPRTPALILC  60
RVAAVKFLAD PETDEVYARI RLVPVENKGD DFDDDNILGG SNETGTNDKP TSFAKTLTQS  120
DANNGGGFSV PRYCAETIFP RLDYTADPPV QTVIAKDVHG ETWKFRHIYR GTPRRHLLTT  180
GWSNFVNQKK LVAGDSIVFL RAENGELCVG IRRAKRGGIG GPETPSGWNS ASGNYGGFST  240
FLREDMNKNG SLNSSWGSFK GKGRVRPESV IEAAYLAASG QPFEVVYYPR ASTPEFCVRV  300
SSVNTAMRVH WCSGMRFKMA FETEDSSRIS WFMGTISSIQ VADPIHWPNS PWRLLQVTWD  360
EPDLLQNVKH VSPWLVELVS NMPVIHLSPF SPPRKKLRLP PDFLLDGQFP LPSFSGNPLR  420
SSSSFCCLSD NITAGIQRAR HAQFGVPLLD LHLSNKVQSG LLPPSFQRVA ADSKRTNCIN  480
KGQNDRNDNI SCLLTMSTSS QMSEKTDSVN TPRFLLFGQP ILTEQQISNR CSANAQEVQT  540
GRDLGRIELR DERFAFEQKG LQDSVSSTTF LWNRGHHAAE LGADTGHCKV FLESEDVGLS  600
LDLSVLGSYE ELYRRLGNLF GLERSDMLTC VLYHDATGAV KHTGDEPFSY FLKTAKRLTI  660
LMNPSSNIER KWITGLATAE RGLDSSNRAG PLSIFA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A8e-84937751388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF9117880.0JF911788.1 Solanum lycopersicum cultivar MP1 auxin response factor 10 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009602946.10.0PREDICTED: auxin response factor 18-like
RefseqXP_009602947.10.0PREDICTED: auxin response factor 18-like
RefseqXP_009602948.10.0PREDICTED: auxin response factor 18-like
RefseqXP_009602949.10.0PREDICTED: auxin response factor 18-like
RefseqXP_009602950.10.0PREDICTED: auxin response factor 18-like
RefseqXP_009602952.10.0PREDICTED: auxin response factor 18-like
RefseqXP_009602953.10.0PREDICTED: auxin response factor 18-like
RefseqXP_009602954.10.0PREDICTED: auxin response factor 18-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A1S3X1K00.0A0A1S3X1K0_TOBAC; Auxin response factor
STRINGXP_009602946.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28350.10.0auxin response factor 10
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]