PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009602849.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NAC | ||||||||
Protein Properties | Length: 458aa MW: 50660.3 Da PI: 6.9417 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 113.7 | 2e-35 | 48 | 193 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.......... 77 lp+G++F+Ptd+el+ e+L++kv +k+ ++++ i+ +i++++P++Lp v+ + + +fF++ +k+y+tg+rk+r+ XP_009602849.1 48 LPAGVKFDPTDQELI-EHLEAKVLAKEskshplIDEFIPtIEGEdGICYTHPEKLP-GVTRDGLSRHFFHRPSKAYTTGTRKRRKiqtecqdlaa 140 799************.99****999996665443333333666646**********.555666799******************86777777765 PP NAM 78 .tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++v++ +g+++g+kk+Lv+y g+++k+ekt+Wvmh+y+l XP_009602849.1 141 aGGETRWHKTGKTRPVMV-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 193 433778************.999***********5547999999*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.01E-38 | 44 | 212 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 33.748 | 48 | 212 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.1E-16 | 49 | 193 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 458 aa Download sequence Send to blast |
MSKSSHQLGS ISSSDLIDAK LEEHQLCGSK QCPGCGHKLE GKPDWVGLPA GVKFDPTDQE 60 LIEHLEAKVL AKESKSHPLI DEFIPTIEGE DGICYTHPEK LPGVTRDGLS RHFFHRPSKA 120 YTTGTRKRRK IQTECQDLAA AGGETRWHKT GKTRPVMVNG KQKGCKKILV LYTNFGKNRK 180 PEKTNWVMHQ YHLGQHEEEK EGELVVSKIF YQTQPRQCNW SNTTTSTTVG GEASSDLNSR 240 RDSGSGSCSS SKDINNNNIP SSHRDELSAA VCAAMSSYAT MDIQQFKAEH FSFLPFRKSF 300 DEAGIVVGEG GGSAAAAAAP VGTSDARDIH ETHHVTHDQQ LHQHHHQVAT ASFHISRPSP 360 PISAIITPPP LHNTSIILGH DDAFHVPRSI ILPNENFQQQ QQHHKLEGRS ASELEQLIMG 420 CTSTDIKGDQ SSITNPQDAD WLKYSHFWPD PDNPDHHA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 9e-13 | 46 | 193 | 13 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975517 | 0.0 | HG975517.1 Solanum lycopersicum chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009602846.1 | 0.0 | PREDICTED: uncharacterized protein LOC104097934 isoform X1 | ||||
Refseq | XP_009602847.1 | 0.0 | PREDICTED: uncharacterized protein LOC104097934 isoform X1 | ||||
Refseq | XP_009602848.1 | 0.0 | PREDICTED: uncharacterized protein LOC104097934 isoform X1 | ||||
Refseq | XP_009602849.1 | 0.0 | PREDICTED: uncharacterized protein LOC104097934 isoform X1 | ||||
Swissprot | Q9M0F8 | 0.0 | NAC75_ARATH; NAC domain-containing protein 75 | ||||
TrEMBL | A0A1J6J8M3 | 0.0 | A0A1J6J8M3_NICAT; Nac domain-containing protein 73 | ||||
TrEMBL | A0A1U7XTH6 | 0.0 | A0A1U7XTH6_NICSY; NAC domain-containing protein 4-like isoform X3 | ||||
STRING | XP_009602846.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29230.1 | 1e-146 | NAC domain containing protein 75 |
Publications ? help Back to Top | |||
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