PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009602802.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

M-type_MADS

Protein Properties

Length: 119aa MW: 13789.8 Da PI: 9.2339

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009602802.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	46.9	3.5e-15	8	54	4	50
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 + k+n+ t+ R++ i K ELS+LCd++ + ii s++g+l++++ XP_009602802.1 8 KKKTNNPKTYQVRKECIKRKTMELSTLCDIKCCTIITSPQGELQTWP 54 57899*****************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	9.741	1	53	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	7.85E-15	8	76	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	5.2E-10	9	53	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 119 aa Download sequence Send to blast
MEEENQNKKK TNNPKTYQVR KECIKRKTME LSTLCDIKCC TIITSPQGEL QTWPENLDAV 60 KEVLNMYTQT LSPNKKEEEI GIPTLVDSKL DAVNKRIRYL ENKNAGFLSN NKGKKQRIE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009602802.1	6e-82	PREDICTED: agamous-like MADS-box protein AGL81
TrEMBL	A0A1S3XD89	1e-78	A0A1S3XD89_TOBAC; agamous-like MADS-box protein AGL81
STRING	XP_009602802.1	2e-81	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3723	16	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39750.1	1e-10	AGAMOUS-like 81