PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009602728.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 279aa    MW: 30863.4 Da    PI: 6.4173
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009602728.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.13.1e-08171218455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++iN+++  L+el+P +     k +  a +L   ++Y++sLq
  XP_009602728.1 171 SHSLAERLRREKINEKLRCLQELVPGC----YKTMGMAVMLDVIINYVRSLQ 218
                     8*************************8....355888888888888888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.53E-16165235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.61E-10165221No hitNo description
Gene3DG3DSA:4.10.280.104.3E-15167228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.231167217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-5171218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-7173223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:2000488Biological Processpositive regulation of brassinosteroid biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MGDHSAADRF QALNSSSSHF MNSNNMELLN SINLEAENFS SNINQHGFLA LSNEDFSNHH  60
SQNIHQLPNM AFHTDMNLSS SISAQNIYDP AAAAQFFTLG GPSSYGCSSN MNSIPESESI  120
LNNNIPNPPP LVSGTAKNCE GRKRKRNNQK EAEKPREVVH VRAKRGQATD SHSLAERLRR  180
EKINEKLRCL QELVPGCYKT MGMAVMLDVI INYVRSLQNQ IDFLSMKLSA ASLFYDFNSS  240
EMDDMDSMQG TNGYAAQGMG KIVGEGYGGV PQFQTSWPL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009602728.10.0PREDICTED: transcription factor BEE 1-like
RefseqXP_016450528.10.0PREDICTED: transcription factor BEE 1-like
TrEMBLA0A1S3YEV40.0A0A1S3YEV4_TOBAC; transcription factor BEE 1-like
STRINGXP_009602728.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA90691724
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25330.11e-58bHLH family protein