PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_009602601.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bZIP

Protein Properties

Length: 243aa MW: 26274.2 Da PI: 9.8195

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009602601.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	36.4	1.1e-11	168	209	5	46
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 k rr+++NReAAr+sR+RKka++++Le+ +L++ ++L+ XP_009602601.1 168 KTLRRLAQNREAARKSRLRKKAYVQQLENSRLKLSQLEQDLQ 209 7889*************************9888888887776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.880.10	4.0E-6	140	184	IPR008917	Transcription factor, Skn-1-like, DNA-binding domain
SMART	SM00338	5.0E-8	164	227	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.358	166	210	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.7E-8	168	209	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.82E-7	168	212	No hit	No description
CDD	cd14708	3.23E-24	168	219	No hit	No description
PROSITE pattern	PS00036	0	171	186	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:3.30.450.40	3.1E-4	185	238	IPR029016	GAF domain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MASKIGTAGN RSGTTGMPSF ISQIPVSNPM GTEANNTNTT RMSDFGVLEQ YLGFRIGDGA 60 NVNRSPLFNS TTATNPAMGF EVSGTINRTL APLNTSLPTS TPGSQTMQLQ SNLVSVSGTH 120 HENWGESNMA DSGSRTDTST DMDADDKNQL IEAGQSSDKS KEKVLDQKTL RRLAQNREAA 180 RKSRLRKKAY VQQLENSRLK LSQLEQDLQR ARQQGKYISN IADQSNGVGA NGMPIAHHLT 240 CVP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	NTU90214	0.0	U90214.1 Nicotiana tabacum leucine zipper transcription factor TGA2.1 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009602601.1	0.0	PREDICTED: TGACG-sequence-specific DNA-binding protein TGA-2.1-like
Swissprot	O24160	1e-161	TGA21_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-2.1
TrEMBL	A0A1S3Y9V6	1e-163	A0A1S3Y9V6_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-2.1-like
STRING	XP_009602601.1	1e-180	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA820	23	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12250.2	2e-39	TGACG motif-binding factor 6