![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_009602534.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 543aa MW: 62705.8 Da PI: 5.7664 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 308.4 | 1.6e-94 | 154 | 528 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn.sseelaalklfsevsPilkf 93 lve Ll+cAe v++++ +a +lL++ +l+s++g+p+qRl+ yf +AL++r+ + +++ k+l+ ++ + ++++ ++ ++ P+ ++ XP_009602534.1 154 LVECLLSCAEKVEQKQYDRAIKLLNECDKLSSKTGNPVQRLVYYFSRALRERVDKeIGKNSTKSLEIYGMRDLQeALRSINQCTIAVQDMPLCQV 248 5789***************************************************8888899999888888655355666666669999****** PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egpp..slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184 ++ qaI+e v +++++HiiD++i++G+QW L+qaL + + +++p l+iT++g+ + s+ +leetg+rL +fAe+l++ f f+ ++++ XP_009602534.1 249 IKFAGIQAIVENVRNSKKIHIIDLEIKMGVQWTILIQALVTHQqeSQSPfeYLKITALGNTQ--SRIKLEETGKRLMRFAESLNLLFYFKSVITE 341 ****************************************887664455458********55..******************************* PP GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres 279 ++ dl+ e+L+++p+E++aV ++ l ++ ++ e+ d +++++k+++P+v+v++e ea+hns+ F++rf+eal y+ a+fd +e + +++ XP_009602534.1 342 DILDLKKEDLDIDPEETIAVYAQHFLTNMIMKQ---EK-LDFLMRFIKGINPRVMVIAEVEANHNSPIFVNRFIEALFYHGAFFDLFEDCMKNNE 432 *****************************9444...44.666***************************************************** PP GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373 ++r+++E e++ + i+n+va+eg+er+ rh t e Wre ++++G+++++ls++ qak++l+k++ ++ +++e + + lv+gWk+ pL+s+SaW XP_009602534.1 433 SNRTTMESEFMWQGIRNIVAAEGEERTIRHVTIELWREYFKRFGMEEMKLSNSSLYQAKMVLEKFStGNSFTLEMNGNFLVIGWKKTPLISLSAW 527 ******************************************************************9999************************* PP GRAS 374 r 374 + XP_009602534.1 528 K 528 8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 44.781 | 128 | 507 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 5.7E-92 | 154 | 528 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 543 aa Download sequence Send to blast |
MEPAQEISWF STGIVLNQED EEDITSKKEL PSNANFVTFD DWYFDVENET KNDLYVTPES 60 LIHNKKERAS LISSLNILKD FGNGFRKLKG QKITIQTSEI ECANDGKLST DAILRLGGQN 120 FIQSFESSVS SSVDHPFVSS LLSLSEKDSR NVELVECLLS CAEKVEQKQY DRAIKLLNEC 180 DKLSSKTGNP VQRLVYYFSR ALRERVDKEI GKNSTKSLEI YGMRDLQEAL RSINQCTIAV 240 QDMPLCQVIK FAGIQAIVEN VRNSKKIHII DLEIKMGVQW TILIQALVTH QQESQSPFEY 300 LKITALGNTQ SRIKLEETGK RLMRFAESLN LLFYFKSVIT EDILDLKKED LDIDPEETIA 360 VYAQHFLTNM IMKQEKLDFL MRFIKGINPR VMVIAEVEAN HNSPIFVNRF IEALFYHGAF 420 FDLFEDCMKN NESNRTTMES EFMWQGIRNI VAAEGEERTI RHVTIELWRE YFKRFGMEEM 480 KLSNSSLYQA KMVLEKFSTG NSFTLEMNGN FLVIGWKKTP LISLSAWKFR KRSNSHGTYF 540 FTL |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 5e-41 | 161 | 530 | 26 | 381 | Protein SCARECROW |
5b3h_A | 4e-41 | 161 | 530 | 25 | 380 | Protein SCARECROW |
5b3h_D | 4e-41 | 161 | 530 | 25 | 380 | Protein SCARECROW |
5hyz_A | 4e-41 | 151 | 528 | 1 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009602534.1 | 0.0 | PREDICTED: DELLA protein RGL1-like | ||||
TrEMBL | A0A1S4BHG3 | 0.0 | A0A1S4BHG3_TOBAC; DELLA protein RGL1-like | ||||
STRING | XP_009602534.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3427 | 21 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G03450.1 | 1e-56 | RGA-like 2 |