PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009602229.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

SRS

Protein Properties

Length: 204aa MW: 22930.6 Da PI: 8.5623

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009602229.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	177.8	4.8e-55	11	149	4	154
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskk 98 +++CqdCGnqakkdC++ RCRtCCksrgf+C+thvkstW p++ rr r++ ++++s+ ++++ + +a ++++ + ++++ + XP_009602229.1 11 SSSRCQDCGNQAKKDCTYLRCRTCCKSRGFHCQTHVKSTWAPVSTRRPRHHLHQQLSTIQQQQYQLQAGPNPNK------------RYRENHEIQ 93 5679******************************************97776666444433333333332222............223334455 PP DUF702 99 eletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 e ++P evs +avfrc+rvss+d+ +++aYqt+v+i+GhvfkGiLydqG+e+ XP_009602229.1 94 GEEGGDFPGEVSFPAVFRCIRVSSIDNVVDQYAYQTSVNIAGHVFKGILYDQGPEN 149 677889**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	2.2E-58	12	148	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	4.8E-26	15	56	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	6.3E-26	100	147	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MMMREVELGS SSSRCQDCGN QAKKDCTYLR CRTCCKSRGF HCQTHVKSTW APVSTRRPRH 60 HLHQQLSTIQ QQQYQLQAGP NPNKRYRENH EIQGEEGGDF PGEVSFPAVF RCIRVSSIDN 120 VVDQYAYQTS VNIAGHVFKG ILYDQGPENR YNNMAAGESS SFQQQQPPNL LTAATTSTTT 180 APSYPNPFSA LMPGTQFIQY PKSS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Suppressor of the gibberellin (GA) signal transduction. {ECO:0000269\|PubMed:10368174, ECO:0000269\|PubMed:11706176, ECO:0000269\|PubMed:16740146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975440	5e-47	HG975440.1 Solanum pennellii chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009602229.1	1e-154	PREDICTED: protein SHI RELATED SEQUENCE 1-like
Refseq	XP_016478329.1	1e-154	PREDICTED: protein SHI RELATED SEQUENCE 1-like
Swissprot	Q9XGX0	1e-53	SHI_ARATH; Protein SHORT INTERNODES
TrEMBL	A0A1S4ANU4	1e-153	A0A1S4ANU4_TOBAC; protein SHI RELATED SEQUENCE 1-like
STRING	XP_009602229.1	1e-153	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4156	24	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66350.1	3e-45	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Islam MA, et al. Overexpression of the AtSHI gene in poinsettia, Euphorbia pulcherrima, results in compact plants. PLoS ONE, 2013. 8(1): p. e53377 [PMID:23308204] Pfannebecker KC,Lange M,Rupp O,Becker A An Evolutionary Framework for Carpel Developmental Control Genes. Mol. Biol. Evol., 2017. 34(2): p. 330-348 [PMID:28049761] Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]