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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
XP_009602229.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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| Family |
SRS |
| Protein Properties |
Length: 204aa MW: 22930.6 Da PI: 8.5623 |
| Description |
SRS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_009602229.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF702 | 177.8 | 4.8e-55 | 11 | 149 | 4 | 154 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskk 98
+++CqdCGnqakkdC++ RCRtCCksrgf+C+thvkstW p++ rr r++ ++++s+ ++++ + +a ++++ + ++++ +
XP_009602229.1 11 SSSRCQDCGNQAKKDCTYLRCRTCCKSRGFHCQTHVKSTWAPVSTRRPRHHLHQQLSTIQQQQYQLQAGPNPNK------------RYRENHEIQ 93
5679********************************************97776666444433333333332222............223334455 PP
DUF702 99 eletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
e ++P evs +avfrc+rvss+d+ +++aYqt+v+i+GhvfkGiLydqG+e+
XP_009602229.1 94 GEEGGDFPGEVSFPAVFRCIRVSSIDNVVDQYAYQTSVNIAGHVFKGILYDQGPEN 149
677889************************************************97 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 204 aa
Download sequence Send
to blast |
MMMREVELGS SSSRCQDCGN QAKKDCTYLR CRTCCKSRGF HCQTHVKSTW APVSTRRPRH 60
HLHQQLSTIQ QQQYQLQAGP NPNKRYRENH EIQGEEGGDF PGEVSFPAVF RCIRVSSIDN 120
VVDQYAYQTS VNIAGHVFKG ILYDQGPENR YNNMAAGESS SFQQQQPPNL LTAATTSTTT 180
APSYPNPFSA LMPGTQFIQY PKSS
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Suppressor of the gibberellin (GA) signal transduction. {ECO:0000269|PubMed:10368174, ECO:0000269|PubMed:11706176, ECO:0000269|PubMed:16740146}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | HG975440 | 5e-47 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |
| Best hit in Arabidopsis thaliana ? help
Back to Top |
| Hit ID |
E-value |
Description |
| AT5G66350.1 | 3e-45 | Lateral root primordium (LRP) protein-related |
| Publications
? help Back to Top |
- Islam MA, et al.
Overexpression of the AtSHI gene in poinsettia, Euphorbia pulcherrima, results in compact plants.
PLoS ONE, 2013. 8(1): p. e53377
[PMID:23308204] - Pfannebecker KC,Lange M,Rupp O,Becker A
An Evolutionary Framework for Carpel Developmental Control Genes.
Mol. Biol. Evol., 2017. 34(2): p. 330-348
[PMID:28049761] - Estornell LH,Landberg K,Cierlik I,Sundberg E
SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
Front Plant Sci, 2018. 9: p. 150
[PMID:29491878]
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