PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009602213.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARF
Protein Properties Length: 893aa    MW: 98660.7 Da    PI: 6.4122
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009602213.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.61.4e-24130231199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++p++ ae+       +++++++ +l+ +d++g++W++++i+r++++r++lt+GW+ Fv+a++L +gD v+F   ++++
  XP_009602213.1 130 FCKTLTASDTSTHGGFSVPRRAAEKVfppldySQQPPCQ-ELIAKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDAVIFI--WNEN 221
                     99*****************************97677775.9************************************************..7888 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                      +l+++++r+
  XP_009602213.1 222 NQLLLGIRRA 231
                     889****997 PP
2Auxin_resp120.99.7e-40256339183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+t+s F+++YnPras+seFv++++k+ ka++ +++svGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k
  XP_009602213.1 256 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYAKAVYhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 339
                     79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.44E-49115259IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.1E-44123245IPR015300DNA-binding pseudobarrel domain
CDDcd100175.20E-23129230No hitNo description
PROSITE profilePS5086313.042130232IPR003340B3 DNA binding domain
PfamPF023621.1E-22130231IPR003340B3 DNA binding domain
SMARTSM010194.3E-25130232IPR003340B3 DNA binding domain
PfamPF065071.2E-34256339IPR010525Auxin response factor
PfamPF023095.8E-7749841IPR033389AUX/IAA domain
SuperFamilySSF542772.49E-7754833No hitNo description
PROSITE profilePS5174523.8759843IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 893 aa     Download sequence    Send to blast
MRVSSAGFNP QPEEATGEKK CLNSELWHAC AGPLVSLPPV GSRVVYFPQG HSEQVAASTN  60
KEVDAHIPNY PGLPPQLICQ LHNLTMHADV ETDEVYAQMT LQPLSAQEQK DVCLLPAELG  120
IPSKQPTNYF CKTLTASDTS THGGFSVPRR AAEKVFPPLD YSQQPPCQEL IAKDLHGNEW  180
KFRHIFRGQP KRHLLTTGWS VFVSAKRLVA GDAVIFIWNE NNQLLLGIRR ANRPQTVMPS  240
SVLSSDSMHI GLLAAAAHAA ATNSRFTIFY NPRASPSEFV IPLAKYAKAV YHTRISVGMR  300
FRMLFETEES SVRRYMGTIT GISDLDPVRW PNSHWRSVKV GWDESTAGER QPRVSLWEIE  360
PLTTFPMYPS PFSLRLKRPW PSGLPSLPGF PNGNMTMNSP LSWLRGDIGD QGIQSLNFQG  420
YGVTPFMQPR IDASMLGLQP DILQTMAALD PSKLANQSFM QFQQSIPGGS ASLSHSQILQ  480
PSLSQQNLLH GFSENQLISQ AQMLQQQLQR RQNYNDQQQL LQPQLQQHQE VNSSQFQHQQ  540
QTKAMSSLSQ MTSAAQPQLS HLQVLSSTGS PQTFSDILGN HVNASSNSTM QSLLSSFSRD  600
GASAVLNMHE AHPLVSSSSS SKRIALESQL PSRVTPFAVP QPEDVISHNT KVSDLSSLLP  660
PFPGRESFSD YRGVEDSQNS ALYGFNTDSL NILQNGMSNM KDSSGDNGSL SIPYATSTFT  720
NTVGNEYPIN SDMTTSSCVD ESGFLQSSEN GDQANPTNRT FVKVHKSGSF GRSLDISKFS  780
SYHELRSELA HMFGLEGLLE DPERSGWQLV FVDRENDVLL LGDDPWQEFV NNVWYIKILS  840
PLEVQQMGKA GLDLPNAGQA QRLPSNGVGC DDYMNQKGSR NTMNGIPLGS LDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1621336042388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ8591560.0GQ859156.1 Nicotiana benthamiana ARF1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009602213.10.0PREDICTED: auxin response factor 6-like isoform X1
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A1J6IHI70.0A0A1J6IHI7_NICAT; Auxin response factor
STRINGXP_009602213.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23682452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.20.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]