PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009602081.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NAC

Protein Properties

Length: 348aa MW: 39522.9 Da PI: 7.9981

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009602081.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	172.6	1.1e-53	8	137	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 +ppGfrFhPtdeel+++yLkkk++ +k+++ evi+evd++k+ePwdL++k+k ++ewyfFs++d+ky+tg+r+nrat++g+Wkatg+dk + XP_009602081.1 8 VPPGFRFHPTDEELLHYYLKKKISFQKFDM-EVIREVDLNKIEPWDLQEKCKIgstPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCI 101 69**************************.99**********964444222455********************************** PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129 + + +++g++ktLvfy+grap+g+ktdW+mheyrle XP_009602081.1 102 RN-SFKKIGMRKTLVFYRGRAPHGQKTDWIMHEYRLE 137 9.8899***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.35E-60	5	159	IPR003441	NAC domain
PROSITE profile	PS51005	58.09	8	159	IPR003441	NAC domain
Pfam	PF02365	6.7E-28	9	136	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009834	Biological Process	plant-type secondary cell wall biogenesis
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0048829	Biological Process	root cap development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence Send to blast
MATSSGGVPP GFRFHPTDEE LLHYYLKKKI SFQKFDMEVI REVDLNKIEP WDLQEKCKIG 60 STPQNEWYFF SHKDRKYPTG SRTNRATNAG FWKATGRDKC IRNSFKKIGM RKTLVFYRGR 120 APHGQKTDWI MHEYRLEDAD DPQGNQSDDG WVICRVFMKK HLFKVGNEGS GAASSDQLNS 180 TSSHQSRAFN SQYLLQQQQQ QQQGGHSLNY SHIPLALPQY NSHLQLQPQN IIPNKPLGYH 240 DFSALPTSDH QAPLMVKQLM SSADSACSDQ NLPYNQQEVG SSCNHHQNLN EWGMIASSHG 300 QLGHGHGQED DNSAKTAGVR FDDANASSVN QINQLSLRGE MDFWGYTK

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence Send to blast

MATSSGGVPP GFRFHPTDEE LLHYYLKKKI SFQKFDMEVI REVDLNKIEP WDLQEKCKIG  60
STPQNEWYFF SHKDRKYPTG SRTNRATNAG FWKATGRDKC IRNSFKKIGM RKTLVFYRGR  120
APHGQKTDWI MHEYRLEDAD DPQGNQSDDG WVICRVFMKK HLFKVGNEGS GAASSDQLNS  180
TSSHQSRAFN SQYLLQQQQQ QQQGGHSLNY SHIPLALPQY NSHLQLQPQN IIPNKPLGYH  240
DFSALPTSDH QAPLMVKQLM SSADSACSDQ NLPYNQQEVG SSCNHHQNLN EWGMIASSHG  300
QLGHGHGQED DNSAKTAGVR FDDANASSVN QINQLSLRGE MDFWGYTK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-52	8	160	17	166	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-52	8	160	17	166	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-52	8	160	17	166	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-52	8	160	17	166	NO APICAL MERISTEM PROTEIN
3swm_A	1e-52	8	160	20	169	NAC domain-containing protein 19
3swm_B	1e-52	8	160	20	169	NAC domain-containing protein 19
3swm_C	1e-52	8	160	20	169	NAC domain-containing protein 19
3swm_D	1e-52	8	160	20	169	NAC domain-containing protein 19
3swp_A	1e-52	8	160	20	169	NAC domain-containing protein 19
3swp_B	1e-52	8	160	20	169	NAC domain-containing protein 19
3swp_C	1e-52	8	160	20	169	NAC domain-containing protein 19
3swp_D	1e-52	8	160	20	169	NAC domain-containing protein 19
4dul_A	1e-52	8	160	17	166	NAC domain-containing protein 19
4dul_B	1e-52	8	160	17	166	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269\|PubMed:20197506}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00431	DAP	Transfer from AT4G10350	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009602081.1	0.0	PREDICTED: protein BEARSKIN2
Swissprot	Q9SV87	1e-133	BRN2_ARATH; Protein BEARSKIN2
TrEMBL	A0A1S3X3A6	0.0	A0A1S3X3A6_TOBAC; protein BEARSKIN2-like
STRING	XP_009602081.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA134	24	297

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G10350.1	1e-133	NAC domain containing protein 70

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Kamiya M, et al. Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis. Development, 2016. 143(21): p. 4063-4072 [PMID:27803060]