PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009602076.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 188aa    MW: 21298.3 Da    PI: 9.3652
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009602076.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.34.2e-111141541055
                     HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     r+RR+riN+++ +L++l+P+      +K++ +++Le+Av Y+k Lq
  XP_009602076.1 114 RKRRERINEKLKTLQSLIPNG-----TKVDISTMLEEAVLYVKFLQ 154
                     9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.008104153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.02E-14104170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-12109163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-11110159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.82E-10113158No hitNo description
PfamPF000101.8E-8114154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MEYNENMPEA VLDIGNGLQL GRRDNYEQFP EDKMDSSSES SKKRCRLHGP GHVPKNKRSA  60
KLEKGGINKV VLQRQNSMIS CCSEDDSVNV SHELTRKTRA SRGSATDPQS LYARKRRERI  120
NEKLKTLQSL IPNGTKVDIS TMLEEAVLYV KFLQLQIKLL SSDDLWMYAP IAYNGMDLGL  180
DLRIGIPK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755223e-39HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016435054.11e-138PREDICTED: transcription factor bHLH84-like isoform X2
SwissprotQ7XHI98e-53BH084_ARATH; Transcription factor bHLH84
TrEMBLA0A1S3X5571e-137A0A1S3X557_TOBAC; transcription factor bHLH84-like isoform X2
STRINGXP_009602075.11e-135(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.14e-54bHLH family protein